Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E11
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    29   0.77 
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.5  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   7.2  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.5  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 280 HQKRTLAFVNHFLTINVQFLNNFM 351
           H KR L F+N FL+I+V F + ++
Sbjct: 404 HSKRKLRFINRFLSISVPFHSPYL 427


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/39 (23%), Positives = 24/39 (61%)
 Frame = +1

Query: 328 VQFLNNFMRNCEQKLMQFERKLXKVNAAMVLLXSKLSSI 444
           V++LNN +  C++   + +  + K++  ++ + ++L SI
Sbjct: 151 VKYLNNKLAVCDRNYSEAQHNISKISPELIGIQTRLVSI 189


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 316 LTINVQFLNNFMRNCEQKLMQFERKLXKVNA 408
           L   V FL+  + + E+KLMQ   K+ +V A
Sbjct: 163 LVAKVNFLSKHLHDNEEKLMQVNAKMDEVLA 193


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 236 NPNPHKRI*LRLRHYIK 286
           NPNPHKR   R R+ +K
Sbjct: 88  NPNPHKRRIKRFRNLLK 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,948
Number of Sequences: 5004
Number of extensions: 35455
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)