Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E11
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-10|AAB54251.1|  189|Caenorhabditis elegans Hypothetical...    35   0.058
Z32679-3|CAA83596.1|  401|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine r...    28   5.0  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AF003386-10|AAB54251.1|  189|Caenorhabditis elegans Hypothetical
           protein F59E12.10 protein.
          Length = 189

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 247 PQTDLTKVAALHQKRTLAFVNHFLTINVQFLNNFMRNCEQKLMQFERKLXKVNAAMVLLX 426
           P  DL KV  +   RT    N  +    + LNNF    E  L + E+ L   +  + L+ 
Sbjct: 9   PAIDLNKVPPIDHHRTAVTFNCLIMKMTEMLNNFGNKMEDILEKAEQSLDTADRKLRLME 68

Query: 427 SKLSSI 444
           SKL+ +
Sbjct: 69  SKLAGM 74


>Z32679-3|CAA83596.1|  401|Caenorhabditis elegans Hypothetical
           protein C05B5.3 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 129 NN*XNKTNSSFQTTRQISFSSCLYSTENDHPRRFNSIRIPTNGFN 263
           N+  N   ++FQ  + +  SS  ++ +N    + N +  PT+GF+
Sbjct: 164 NSNQNLNQNNFQQNQNLGASSGFFNNQNQQNSQQNQVNGPTSGFS 208


>AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine
           receptor, class x protein22 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 212 IFSRI*TRRKRNLSCGLEA*ICFVXLIILQ*QSFSFRDSRTYLFT 78
           IF++  T   +N++C +   ICF+   +L    + + D+RT+ FT
Sbjct: 114 IFTKFNTNLMKNIACFIGFSICFLFYDVL--GCYFYYDTRTFTFT 156


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 434 NLDXNKTMAALTFXNFLSNCISFCSQFLIKLFRNCTF 324
           N D N  +  LT+ +  +N I++C  FL K FRN  +
Sbjct: 447 NSDINTFITLLTYISSCTNPITYC--FLNKKFRNAVY 481


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 434 NLDXNKTMAALTFXNFLSNCISFCSQFLIKLFRNCTF 324
           N D N  +  LT+ +  +N I++C  FL K FRN  +
Sbjct: 336 NSDINTFITLLTYISSCTNPITYC--FLNKKFRNAVY 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,402
Number of Sequences: 27780
Number of extensions: 196776
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)