Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E10
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   118   3e-28
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   118   5e-28
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    29   0.48 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   1.5  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    26   3.4  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.5  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   5.9  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   5.9  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   7.8  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   7.8  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   7.8  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  118 bits (285), Expect = 3e-28
 Identities = 57/89 (64%), Positives = 68/89 (76%)
 Frame = +1

Query: 133 LHFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLXEXERERRDNYV 312
           L F TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KL E ERER+D YV
Sbjct: 26  LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYV 85

Query: 313 PEVSALEHDIIEVDPDTNDMLKMLDFNNI 399
           PEVS LE D I VD DT DMLK L +++I
Sbjct: 86  PEVSELEKDKINVDQDTKDMLKALGYDSI 114



 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +3

Query: 69  RTKTVKKAAXIIIEKYYTRLTLAF 140
           RTKT K+A+ ++IEKYY RLTL F
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDF 28


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  118 bits (284), Expect = 5e-28
 Identities = 59/100 (59%), Positives = 73/100 (73%)
 Frame = +1

Query: 133 LHFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLXEXERERRDNYV 312
           L F TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KL E ERER+D YV
Sbjct: 26  LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYV 85

Query: 313 PEVSALEHDIIEVDPDTNDMLKMLDFNNINGLQLTQPATQ 432
           PEVS LE D + VD DT DMLK L ++ I  +++  PA Q
Sbjct: 86  PEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124



 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +3

Query: 69  RTKTVKKAAXIIIEKYYTRLTLAF 140
           RTKT K+A+ ++IEKYY RLTL F
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDF 28


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 411 LQAINIVEVQHLQHIVGVGVYFDDVMFESRHFWDIVVTPLTLLF-XKFDR-DSSHL 250
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L   KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 110  KILYKINTCILIQIKEYVKKSLSFLPS 190
            KIL  IN C LI +K Y+K + S   S
Sbjct: 1499 KILAGINLCNLIYLKRYIKYAFSISDS 1525


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 119 YKINTCILIQIKEYVKKSLSFLPSLLGIKLLD 214
           YK+N   +I++K+ + KSL F   + G+KL+D
Sbjct: 10  YKLNHT-MIRVKD-LDKSLKFYTEVFGMKLID 39


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 212 PAILFLRGLVGMIAISSHILLFVSK 138
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 375 QHIVGVGVYFDDVMFESRHFWDIVVTPLTLLFXKFDRD 262
           Q  + VG+  DD+   +R+   ++ TP++ L    DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 68  GHDPWLKLYSAAFDK 24
           G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 166 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 258
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -2

Query: 254 TC-ECLRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKCKC*SCIVFFNNNXRRFLDG 78
           TC  C R++IKC+ N         VG+ ++   ++L +  C+    +     N +++   
Sbjct: 89  TCFYCSRKIIKCICN------EEHVGIESVQLKLILLL--CQ---NLPNVTTNAKKYFSS 137

Query: 77  FSPGHDPWLKLYSAAFD 27
            + GH+  L LY  + D
Sbjct: 138 LADGHNFTLTLYKFSLD 154


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 193 LRNKIAGF----ATHLMRRLRHSQVRGISIKLXEXERERRDNYVPEVSALEHDIIEV 351
           +R +IA F    A H ++R   S+    ++ + E   +R   Y+P +S    + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,919
Number of Sequences: 5004
Number of extensions: 33416
Number of successful extensions: 85
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)