Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E10
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            109   8e-25
10_07_0174 + 13815478-13815903                                        109   1e-24
06_01_0889 - 6807449-6809257                                           30   1.1  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    28   4.4  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    28   4.4  
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    27   7.7  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  109 bits (263), Expect = 8e-25
 Identities = 54/97 (55%), Positives = 73/97 (75%)
 Frame = +1

Query: 133 LHFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLXEXERERRDNYV 312
           L F TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KL E ERERR ++V
Sbjct: 26  LDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEEERERRMDFV 85

Query: 313 PEVSALEHDIIEVDPDTNDMLKMLDFNNINGLQLTQP 423
           P+ SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 86  PDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121



 Score = 37.5 bits (83), Expect = 0.005
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +3

Query: 69  RTKTVKKAAXIIIEKYYTRLTLAF 140
           RTKTVKK +  +IEKYY+R+TL F
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDF 28


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  109 bits (262), Expect = 1e-24
 Identities = 52/96 (54%), Positives = 71/96 (73%)
 Frame = +1

Query: 133 LHFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLXEXERERRDNYV 312
           L F TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KL E ERERR ++V
Sbjct: 26  LDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMDFV 85

Query: 313 PEVSALEHDIIEVDPDTNDMLKMLDFNNINGLQLTQ 420
           PE SALE + I VD +T +ML  L   ++ G++  Q
Sbjct: 86  PEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121



 Score = 37.5 bits (83), Expect = 0.005
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +3

Query: 69  RTKTVKKAAXIIIEKYYTRLTLAF 140
           RTKTVKK +  +IEKYY+R+TL F
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDF 28


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 238 LRHSQVRGI-SIKLXEXERERRDNYVPEVSALEHDIIEVDPD 360
           LRH Q R I ++ +    R R + YVP+     HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


>04_04_1574 -
           34536744-34537136,34541247-34541405,34541497-34542411,
           34543642-34543731,34544324-34544390,34544483-34544676,
           34544770-34545510,34545596-34545661,34545783-34545908,
           34545978-34546073,34546153-34546521,34546602-34546724,
           34546802-34546906,34547394-34547531,34547665-34547760,
           34548018-34548275
          Length = 1311

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 239 SDTRKCEESLSNFXXRSVRGVTTMSQKCLLSNMTSSK*TPTPTI 370
           +DTR C  SL+NF     R ++T  QK   + M      P+ ++
Sbjct: 450 ADTRDCSPSLANFFGAPKRILSTSKQKLGATRMVRLSSQPSSSV 493


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 244 HSQVRGISIKLXEXERERRD-NYVPEVSALEHDIIEVDPD 360
           H Q + I  KL E  R  R+  Y PEV A  HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 360 VGVYFDDVMFESRHFWDIVVTPL 292
           V + FDDV  E   +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,213,102
Number of Sequences: 37544
Number of extensions: 199978
Number of successful extensions: 466
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)