Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E08
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 112 9e-26
02_05_0416 + 28791512-28792012 112 9e-26
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 3.5
07_03_0313 + 16620817-16621515 27 4.6
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 4.6
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 4.6
03_06_0008 - 30978448-30978593,30978673-30978733,30978822-309790... 27 6.0
03_06_0006 + 30963331-30963457,30963751-30964715,30965166-309653... 27 6.0
12_02_0954 - 24757417-24758214 27 8.0
>04_04_1026 + 30214437-30214937
Length = 166
Score = 112 bits (270), Expect = 9e-26
Identities = 52/75 (69%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Frame = +3
Query: 132 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATS-DWKGLKIT 308
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIA T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 309 VQLTVQNRQAQIAVV 353
V+LTVQNRQA+++VV
Sbjct: 61 VKLTVQNRQAKVSVV 75
>02_05_0416 + 28791512-28792012
Length = 166
Score = 112 bits (270), Expect = 9e-26
Identities = 52/75 (69%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Frame = +3
Query: 132 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATS-DWKGLKIT 308
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIA T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 309 VQLTVQNRQAQIAVV 353
V+LTVQNRQA+++VV
Sbjct: 61 VKLTVQNRQAKVSVV 75
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 129 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 257
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 295 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 158
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 282 LWXWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 175
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 171 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 272
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>03_06_0008 -
30978448-30978593,30978673-30978733,30978822-30979007,
30979458-30980422,30980716-30980842
Length = 494
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 293 GSQDHCAADSSKQTSPDSCCSPLQ 364
G+ +HC D+ K T D+ PLQ
Sbjct: 123 GNSEHCMLDTRKTTDHDTSSMPLQ 146
>03_06_0006 +
30963331-30963457,30963751-30964715,30965166-30965351,
30965440-30965500,30965580-30965623
Length = 460
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 293 GSQDHCAADSSKQTSPDSCCSPLQ 364
G+ +HC D+ K T D+ PLQ
Sbjct: 123 GNSEHCMLDTRKTTDHDTSSMPLQ 146
>12_02_0954 - 24757417-24758214
Length = 265
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 367 APYHQSPLRXLPPEP 411
AP HQSP+ LPP P
Sbjct: 3 APLHQSPVPLLPPPP 17
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,294
Number of Sequences: 37544
Number of extensions: 254402
Number of successful extensions: 596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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