Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E08
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   131   2e-31
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    26   9.5  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    26   9.5  
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  131 bits (316), Expect = 2e-31
 Identities = 59/74 (79%), Positives = 67/74 (90%)
 Frame = +3

Query: 132 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITV 311
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIA AT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 312 QLTVQNRQAQIAVV 353
           +LT+QNR A+I VV
Sbjct: 61  KLTIQNRVAKIDVV 74


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 229 VLLVCLLKRWVMTL 270
           +L++CLLKRW M L
Sbjct: 180 ILMICLLKRWKMNL 193


>U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical
           protein C02B8.6 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 319 VSCTVILRPFQSLVALAMSSPTFL-GDRPR 233
           ++C V  RPF S + L +S+   L GD PR
Sbjct: 38  LNCAVCRRPFDSSIILNLSAQVCLKGDAPR 67


>U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical
           protein C25A11.2 protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 258 GDDIAXATSDWKGLKITVQLTVQNRQAQI 344
           GD +  A+S W+GL+  V+ ++ N   ++
Sbjct: 72  GDSVKTASSSWQGLQWKVKCSIYNLPGEL 100


>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 183 VGGEVGATSSLAPKIG 230
           VGG VGATSS AP  G
Sbjct: 42  VGGSVGATSSAAPSGG 57


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 183 VGGEVGATSSLAPKIG 230
           VGG VGATSS AP  G
Sbjct: 32  VGGSVGATSSAAPSGG 47


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 183 VGGEVGATSSLAPKIG 230
           VGG VGATSS AP  G
Sbjct: 32  VGGSVGATSSAAPSGG 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,853,411
Number of Sequences: 27780
Number of extensions: 197272
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)