Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E08
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 415 FTVQGGGSLRGS-DDKGLLQRGTTAIWACLF*TVSC 311
           +T  G  S+ G+  +K LL  G T I AC    V+C
Sbjct: 287 WTPYGVMSMIGAFGNKALLTPGVTMIPACTCKAVAC 322


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 391 LRGSDDKGLLQRGTTAI 341
           ++ ++DKGLL+ G T I
Sbjct: 86  IQDAEDKGLLKPGCTII 102


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 155 IWVKLRGHFVDYLVQLYTIITLNPN 81
           +W K   +   Y+  LYT +   P+
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRPD 153


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 155 IWVKLRGHFVDYLVQLYTIITLNPN 81
           +W K   +   Y+  LYT +   P+
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRPD 153


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 138 PKFDPNEIKIVNLRCVGGEVGATSSLA 218
           P   PN  K++      GE G  +SLA
Sbjct: 588 PDPXPNTCKVIASSVSAGEEGLGNSLA 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,992
Number of Sequences: 438
Number of extensions: 2553
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)