Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E07
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   155   2e-39
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   151   6e-38
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.40 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   0.71 
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    26   2.2  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  155 bits (377), Expect = 2e-39
 Identities = 74/117 (63%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
 Frame = +2

Query: 56  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 235
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 236 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRXIRT-PPKSNFPRDMSR--PQAVQR 397
            + +PKLY KL YCVSCAIHS+VVR RS + R IRT PP+  + RD  +  P AV +
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  151 bits (365), Expect = 6e-38
 Identities = 71/117 (60%), Positives = 90/117 (76%), Gaps = 3/117 (2%)
 Frame = +2

Query: 56  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 235
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 236 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRXIRT-PPKSNFPRDMSR--PQAVQR 397
            + +PK+Y KL YCVSCAIH++VVR RS + R IRT PP+  + RD  R  P A+ +
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 137 RCVPKDKAIKKFVIRNIVEAAAVRDI 214
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 196 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 77
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 303 LSGTDRXKTEXSVLLPRVTSLGT 371
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,227
Number of Sequences: 5004
Number of extensions: 26044
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)