Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E07
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 151 2e-37
02_05_0628 - 30466535-30468001 29 2.1
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 28 2.8
07_03_0361 + 17215312-17216217 28 2.8
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 27 4.9
09_02_0370 - 8049712-8049864,8049865-8049933 27 6.4
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 8.5
06_03_0803 + 24737115-24737366,24738921-24739004,24739152-247392... 27 8.5
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 8.5
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 151 bits (366), Expect = 2e-37
Identities = 68/110 (61%), Positives = 87/110 (79%)
Frame = +2
Query: 56 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 235
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 236 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRXIRTPPKSNFPRDMSRPQ 385
+ LPKLYAK+H+CVSCAIH+ +VR RS ++R R PP+ F R + P+
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109
>02_05_0628 - 30466535-30468001
Length = 488
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +2
Query: 20 CRSLFTGLEVXNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAA 199
CR+ F+G R+ GRA H + CAR +P A + + +V++
Sbjct: 34 CRAAFSGDAALRAFRRHHLDGRALHANPALVPALAA-CARLLPSAAAEAEQIHALLVKSG 92
Query: 200 AVRDINDASVYPMFQLPKLYAKL 268
+ + VY L ++YA+L
Sbjct: 93 DPPSV--SGVYASTSLVRVYARL 113
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 211 ISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVXNLQS 38
+S+ R NH D+ H P A+C HS ++ + LG+ +T +LQS
Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQS 678
>07_03_0361 + 17215312-17216217
Length = 301
Score = 28.3 bits (60), Expect = 2.8
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +2
Query: 23 RSLFTGLEVXNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAA 202
R+ +G E T K++ GG G G + V+ + +A K+ ++ +VE AA
Sbjct: 47 RAAVSGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDGALRAAKERLV--VVEFAA 101
Query: 203 VRDINDASVYP-MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRXIRTP 346
+N + +YP M +L + + + + S R ++ P
Sbjct: 102 SHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRELCRREGITAVP 150
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 223 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 71
GI + D +YD + LF+ L+ P A +SH+F+ V T + S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491
>09_02_0370 - 8049712-8049864,8049865-8049933
Length = 73
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 415 FINKSLPLHCLWT*HVPREVTLG 347
FI K+LP CLW H E+ LG
Sbjct: 47 FILKTLPYACLWFVHRKSELLLG 69
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 59 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 208
T RR A G G AV C +CA P + A+ + + A R
Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127
>06_03_0803 +
24737115-24737366,24738921-24739004,24739152-24739255,
24739321-24739445,24739549-24739707,24740120-24740237,
24740317-24740851,24740948-24741042,24741153-24741431,
24741478-24741592,24741669-24741855,24741934-24742490
Length = 869
Score = 26.6 bits (56), Expect = 8.5
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1
Query: 163 DSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVXNLQSGEQRTAGK 14
D L L H + + A H ++T MLG S A SHV +G Q A K
Sbjct: 131 DMLRLHH--QMLTAVHDGSLTNWMLGLSMEKAEASHVYTYSNGFQGFAAK 178
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 205 DRRRFYDVPNHELFD 161
DR FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,316
Number of Sequences: 37544
Number of extensions: 202183
Number of successful extensions: 518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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