Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E04
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   1.8  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   5.6  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    25   7.3  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   7.3  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 485 WIYFLLFPLATFALIATYSFS 547
           W+  ++FPL  F +I+ Y+FS
Sbjct: 718 WLSTVIFPLLCFTVISAYNFS 738


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +1

Query: 127 QVIASSAT-NVTVNRIRTAGTRSRAPNPQXNATPRIRLTSTRSTCATFCLSKS*TALREL 303
           Q I+SS+T N T +    +   +  P P   +T    +TST +T  T   + + TA    
Sbjct: 168 QPISSSSTYNSTTSSYHNS---TSTPPPTITSTKASTVTSTEATTVTTTTAVTVTATE-- 222

Query: 304 LXTVTRSS*RAELLSVLAWMSTPTIPST 387
             TVT ++  + + S  A   T T PST
Sbjct: 223 TYTVTATNGGSTITSTGASTVTSTQPST 250


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 123 ETGYCIKCYQCNSEQDKNCG 182
           ++ YC+KC+Q    +  +CG
Sbjct: 398 QSHYCLKCFQVKPPRSYHCG 417


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = +1

Query: 208 QXNATPRIRLTSTRSTCATFCLSKS*TALRELLXTVTRSS*RAELLSVLAWMSTPTIPST 387
           + N T    +T T   CA  CL +   AL  L   +       E LS +    T   P  
Sbjct: 188 ELNGTDSNPMTLTGMACADICLLRPEEALSSLKTALDSQPNYEEALSNMTTAITDLGPDA 247

Query: 388 PAE 396
           P++
Sbjct: 248 PSQ 250


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 263 VAQVERVEVNRILGVAXYWGFGALERVPAVLILFTVTLVALDAITC 126
           +  +  +  N IL +    GFG +E   + + +FTV    ++ I C
Sbjct: 150 ITPITSLSANIILNMLPVGGFGEIEYWLSSIKVFTVAAFIVNGILC 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,934
Number of Sequences: 5004
Number of extensions: 39659
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)