Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E04
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    33   0.15 
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696...    30   1.1  
01_05_0397 + 21753095-21753814                                         29   1.8  
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239...    28   4.3  
07_03_1382 - 26170563-26170631,26171151-26171843                       27   7.5  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    27   9.9  
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    27   9.9  

>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -1

Query: 440 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVXRSSRNAVQDFDRQN 264
           +R + D GVG E++   G   I+G+  +Q STD+S+++ +++  + R   +  Q      
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKREHPDDDQCIVNDR 449

Query: 263 VAQVERVEVNRILG 222
           V    R++V R  G
Sbjct: 450 VK--GRLKVTRAFG 461


>01_06_0357 -
           28668894-28669238,28669510-28669537,28669578-28669635,
           28669836-28669916,28670395-28670526,28670609-28670926,
           28672495-28673317
          Length = 594

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 360 DVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNKDNCNGAGSISFXSHW 512
           D    D +     ++L +  AI  S KV+     +KD+    G + F SHW
Sbjct: 408 DNGGGDGERESTTIKLTAIEAIFTSEKVQDIVPISKDSVLILGQVPFCSHW 458


>01_05_0397 + 21753095-21753814
          Length = 239

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 357 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 467
           +D N + ++H    +++  +TA +DS  V SC VC +
Sbjct: 8   VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44


>08_02_1417 -
           26922775-26922986,26923102-26923291,26923816-26923928,
           26924032-26924112,26925329-26926661
          Length = 642

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 177 SSYPVHCYIGST*CNNLFRIALVEQRRRMLHFLP 76
           + + ++CYIGS+  +   +  +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170


>07_03_1382 - 26170563-26170631,26171151-26171843
          Length = 253

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 372 NDSQHTCRVVELASNTAIADSAKVKSCAVC 461
           ND  H   V+++ +  A A +   +SCAVC
Sbjct: 42  NDDDHHSHVIDIDAAAAAAAAGGRRSCAVC 71


>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
            25826468-25827080,25827735-25827775,25830549-25831191,
            25832595-25834012,25834110-25834251,25834415-25834522,
            25835346-25835558,25835643-25835753,25836099-25836293,
            25836555-25836695,25836835-25836909
          Length = 1806

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 139  SSATNVTVNRIRTAGTRSRAPNPQXNATPRIRLTSTRSTCATFCLSKS 282
            +S+TN +++ ++T+G  S  P P  N    +R T + S  +T   S S
Sbjct: 1039 NSSTNFSIDAVKTSGLNSWTPVPVTNT---VRSTHSNSISSTSVPSSS 1083


>01_01_0623 +
           4672581-4673413,4674274-4674389,4674694-4674902,
           4675953-4676072,4676185-4676313,4676394-4676442,
           4676899-4676970,4677574-4677707,4677798-4677915,
           4678332-4678541,4678630-4678942,4679539-4679632,
           4679854-4679962,4680243-4680514,4680597-4680724,
           4680832-4681066,4681570-4681758,4681845-4682128,
           4682218-4682398,4682486-4682728,4682904-4682986,
           4683119-4683227,4687996-4688091,4688675-4688764,
           4688881-4689129,4689233-4689412,4690179-4690250,
           4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +3

Query: 174 NCGD---PFKSAKPPVXCNTQDSINFNTLYLRNILPVEVLNSVTGAPXYCHKI----VMK 332
           NC D   P +   PP  CN   S++F TL +  +  +++   V G   + ++     V  
Sbjct: 526 NCDDDICPVEIIHPPEDCNLNSSLSF-TLQVCRVEDIDIWGLVQGTVIHFNRARSVSVHT 584

Query: 333 SGTVVRTCL 359
           SGT+  T L
Sbjct: 585 SGTISATGL 593


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,240
Number of Sequences: 37544
Number of extensions: 279258
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)