Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E04
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    30   1.3  
AF016427-6|AAY86198.1|  177|Caenorhabditis elegans Hypothetical ...    29   2.9  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    28   5.1  
Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 348 RTCLDVNPNDSQHTCRVVELASNTAIA 428
           R C+ +N ND Q +CR V+L     IA
Sbjct: 221 RCCVKLNKNDKQTSCRTVDLQKQLMIA 247


>AF016427-6|AAY86198.1|  177|Caenorhabditis elegans Hypothetical
           protein F32D1.11 protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 24/119 (20%), Positives = 41/119 (34%)
 Frame = +3

Query: 123 ETGYCIKCYQCNSEQDKNCGDPFKSAKPPVXCNTQDSINFNTLYLRNILPVEVLNSVTGA 302
           + G+  +CY CN E  KN   P    K    C    S +   +Y      V    +    
Sbjct: 13  QLGHAFECYTCNEELTKN--GPCIDRK--TICENSTSCSMAVMYHAGRSIVRKFCTPPST 68

Query: 303 PXYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNKDNCN 479
           P Y + ++M   ++   C +++  D     R     +    +   +     VC    CN
Sbjct: 69  PIYQYLMMMPGASM---CQNIDLTDLVPPVRQRRHVTGPPASPGEQASLLCVCTTPMCN 124


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = +3

Query: 144 CYQCNSEQDKNCGDP---FKSAKPPVXCNTQDSINFNTLYLRNILPVEVLNSVTGAPXY- 311
           C  C ++  + C       +SAK    CNTQ      T   R++L  ++ + V     + 
Sbjct: 563 CGSCGTQYRERCTSTTNCLRSAKQTRVCNTQPCAQGTTRGKRSVLQTQISHRVKRLNGWC 622

Query: 312 CHKIVMKSGTVV 347
           C + V+  G  V
Sbjct: 623 CARFVLSRGVCV 634


>Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical
           protein T03F6.9 protein.
          Length = 138

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 459 CNKDNCNGAGSIS 497
           C KD CNGAG +S
Sbjct: 107 CGKDKCNGAGKVS 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,171,427
Number of Sequences: 27780
Number of extensions: 243424
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)