Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E03
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 40 4e-04
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 38 0.001
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 34 0.016
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 31 0.11
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.0
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 28 1.4
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 4.1
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 5.5
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 26 5.5
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 25 7.2
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 9.5
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +1
Query: 316 YEVXKILDSXKIKG---KLHYLIRWKGYSADSDTWEPEQTLS-CPELIGKF 456
YEV +I+D + KL Y IRW YS+ SDTWEP + LS C ++ ++
Sbjct: 8 YEVERIVDEKLDRNGAVKL-YRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 57
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 316 YEVXKIL-DSXKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGK 453
YEV IL D G Y I+W GY +TWEPEQ L E + K
Sbjct: 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 34.3 bits (75), Expect = 0.016
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 5/116 (4%)
Frame = +1
Query: 115 SSTNGSLLNDD-QTATENKTVESVTDESVDQNNDDFSNXXXXXXXXXXXXXXXXXXXXXX 291
S++ S+++DD + + T E++ D + D
Sbjct: 13 STSKRSVIDDDSEPELPSMTKEAIASHKADSGSSDNEVESDHESKSSSKKLKENAKEEEG 72
Query: 292 XXXVVEXXYEVXKILDSXKIK--GKLHYLIRWKGYSADSD-TWEPEQTLS-CPELI 447
E Y V K+L + G YL++W+GY SD TW E S C +LI
Sbjct: 73 GEEEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLI 128
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 316 YEVXKILDSXKIK--GKLHYLIRWKGYSADSD-TWEPEQTLS-CPELIGKF 456
+ V ILDS K Y ++W+GY SD TW E+ + C ELI +
Sbjct: 176 FAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 100 DDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNND 213
D+D+ + + ++ DQTA +NK + DES D
Sbjct: 1847 DEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQD 1884
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 352 KGKLHYLIRWKGYSADSDTWEPEQTLS 432
K YLI+W+ S +TWE TLS
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWEDYSTLS 253
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 352 KGKLHYLIRWKGYSADSDTWE 414
+GK Y ++W+ D+ TWE
Sbjct: 317 EGKTEYFVKWRQLPYDNCTWE 337
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 97 TDDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDFSN 225
+DD V SS S ++ + TE+ + ESV D S +++D+ S+
Sbjct: 121 SDDSVDSSNKNSEVSIKRRKTESNSQESV-DSSNSESSDEESD 162
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 355 GKLHYLIRWKGYSADSDTWE 414
G + YL++WK D TWE
Sbjct: 302 GSVEYLVKWKQLLYDFCTWE 321
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 79 KISKNRTDDDVXSSTNGSLLNDDQTAT--ENKTVESVTDESVDQNNDDFSN 225
K+SK R + ++ NG DD AT + TV + V ++ +++
Sbjct: 69 KVSKLRAQEAAEAAANGGSTGDDVNATNANDATVPATVSSEVTHTSEGYAD 119
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 64 KFIMRKISKNRT-DDDVXSSTNGSLLND 144
+ + ++ S NRT DDD+ S + SL ND
Sbjct: 382 QLVRQRYSVNRTDDDDLQSEPSSSLTND 409
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 82 ISKNRTDDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDFS 222
+ +N D++ S+T + + N+ + TDE + N D FS
Sbjct: 58 VEENNEDENSMSTTTIEIPVVKRRNLRNQKKKKKTDEEAEDNEDTFS 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,722
Number of Sequences: 5004
Number of extensions: 29281
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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