Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E03
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    42   4e-04
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    40   0.002
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36...    39   0.003
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851...    33   0.26 
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630...    29   3.2  
09_02_0539 - 10408398-10409552                                         27   9.9  

>03_02_0234 +
           6625417-6626184,6626314-6626339,6626435-6626531,
           6627009-6627116,6627194-6627328,6627429-6627528,
           6627763-6627974,6628060-6628125,6628231-6628464,
           6628583-6628641,6628716-6628782,6628863-6629192,
           6629267-6629335,6629417-6629503,6629605-6629692,
           6630057-6630178,6630251-6630355,6630442-6630485,
           6630558-6630627,6630711-6630814,6630980-6631189,
           6632935-6633018,6633291-6634003,6634115-6634649,
           6634703-6634789,6634826-6634970,6635049-6635125,
           6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 352 KGKLHYLIRWKGYSADSDTWEPEQTLS-CPELIGKF 456
           K  L + +RWKGY    DTWEP   LS CPE I +F
Sbjct: 576 KNGLWFKVRWKGYDPSYDTWEPIDGLSDCPERIKEF 611


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 337  DSXKI-KGKLHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 456
            D  K+ K  L++ +RWKGY    DTWEP + L +C E I  F
Sbjct: 947  DPNKVSKHGLYFKVRWKGYGPHHDTWEPVEGLRNCKEAIRDF 988


>10_01_0028 -
           359988-359996,360228-360332,360415-360536,360676-360763,
           360988-361056,361132-361461,361544-361610,361695-361753,
           361838-362056,362224-362289,362370-362500,362683-362782,
           362864-363001,363111-363218,363627-363723,363806-364257
          Length = 719

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 361 LHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 456
           L++ ++WKGY  + DTWEP + L  CP  I +F
Sbjct: 434 LYFKVQWKGYGREEDTWEPIENLRDCPLKIKEF 466


>10_05_0046 +
           8516043-8516425,8517908-8518019,8518276-8518377,
           8518605-8518657,8518976-8519062,8519162-8519830,
           8520154-8520214,8520295-8520342
          Length = 504

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 301 VVEXXYEVXKILDSXKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGK 453
           + E  YE+  I      KGKL YL++W G   +   W+    L+ PEL G+
Sbjct: 102 LAEGYYEIEDIRRRRLRKGKLQYLVKW-GSQWEGGAWD----LAAPELSGR 147


>09_06_0056 -
           20561645-20561920,20562024-20562611,20562698-20563055,
           20563149-20563483,20563593-20563633,20563722-20563932,
           20564289-20564348,20564432-20564457,20565066-20565264
          Length = 697

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +1

Query: 55  LLIKFIMRKISKN-RTDDDVXSSTNGSLLNDDQTATENKTVE---SVTDES 195
           L + F  ++ S + +TDD V   +N SL  DD+  +EN + E   S+TD++
Sbjct: 110 LSVDFFRKRASPSWKTDDLVNDLSNASLDVDDKVKSENSSAEHELSLTDKT 160


>09_02_0539 - 10408398-10409552
          Length = 384

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 100 DDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDFSN 225
           D+DV      +  +DD+ + E +T +  TD S + N+DD +N
Sbjct: 47  DEDVSDEDEFTEASDDEESME-ETDDDETDASSNDNDDDTAN 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,622,734
Number of Sequences: 37544
Number of extensions: 160679
Number of successful extensions: 425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)