Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E03
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23) 63 2e-10
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 56 3e-08
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 44 8e-05
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10) 43 2e-04
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 30 1.9
SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16) 29 4.4
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09) 28 5.8
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_54157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_56132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_44597| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.6
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_5412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
Length = 226
Score = 63.3 bits (147), Expect = 2e-10
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +1
Query: 304 VEXXYEVXKILDSXKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 456
VE YEV K++D I G + YL++WKGY +TWE E+ L CPELI ++
Sbjct: 24 VEEEYEVEKVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEY 74
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 316 YEVXKILDSXKIKGKLHYLIRWKGYSADSDTWEPEQ--TLSCPELIGKF 456
+E IL + ++ G++H+LI+WK S D P + L P+++ KF
Sbjct: 129 WEADTILGATEVDGQIHFLIQWK--STDRADLIPSKVANLKWPQIVIKF 175
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 319 EVXKILDSXKIKGKLHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 456
+V KILD +GK+ YL+RWKGY DTWEP + L C ELI F
Sbjct: 906 KVEKILDRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKELIDNF 952
>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
Length = 411
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 316 YEVXKILDSXKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 447
Y IL GK+ Y I+WKGYS +TWEPE+ + P L+
Sbjct: 25 YAAETILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPRLL 68
>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
Length = 517
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 355 GKLHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 456
G ++ +RWKGY+ D DTWEPE+ + C +++ +F
Sbjct: 15 GVRYFKVRWKGYTPDDDTWEPEENVFECEDVLEEF 49
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 46 RTGLLIKFIMRKISKNRTDDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDFSN 225
R LL+ +RK+ + DDD+ N S + D +T N D+S++ D SN
Sbjct: 536 RQQLLVIITIRKLLADELDDDLLDEDNASFSSHDLRSTTNSRASQPLDDSLNLPQDSDSN 595
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 355 GKLHYLIRWKGYSADSDTWEPEQTL 429
GK YL+ WK Y TWEP + L
Sbjct: 36 GKEEYLVHWKKYKVWESTWEPLENL 60
>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 100 DDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNNDD 216
DDDV ++ + +DD AT++ V + D+ D ++DD
Sbjct: 8 DDDVAAADDDVATDDDDVATDDDDVANDDDDDDDDDDDD 46
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 82 ISKNRTDDDVXSST---NGSLL-NDDQTATENKTVESVTDESVDQNNDDF 219
++K R D D + N L+ NDD++ +N + S+ DE ++ NND F
Sbjct: 1583 LNKGRQDSDELAKLERDNYRLVDNDDRSTRQNLELTSLDDERLEPNNDRF 1632
>SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 85 SKNRTDDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNND 213
+KN DDD + N + DD N + D+S + NND
Sbjct: 137 NKNDNDDDYDDNNNNNDDYDDDNNNNNNDDDDEDDDSNNNNND 179
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 85 SKNRTDDDVXSSTNGSLLNDDQTATENKTV---ESVTDESVDQNND 213
S N T D ++TN +D+ T T+N T E+ TD +ND
Sbjct: 331 SDNDTTSDNDTTTNNDATSDNDTTTDNDTTTDNETNTDNESASDND 376
>SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 100 DDDVXSSTNGSLLNDDQTATENKTVES-VTDESVDQNNDD 216
DDD + +G ++NDD N + V D+ VD +DD
Sbjct: 171 DDDHNDAVDGDVVNDDDDNVVNDDDDDVVVDDDVDDADDD 210
>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
Length = 1456
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +1
Query: 316 YEVXKILDSXKIKGKLHYLIRWKGYSADSDTWEP 417
+++ ++L + K G+ Y + WKG+ ++W P
Sbjct: 1227 FKIDRVLKTWKRGGRGEYWVHWKGWPDKYNSWVP 1260
>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
Length = 590
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 322 VXKILDSXKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 447
V K+L+ + YL+ W S DS TWEP + LI
Sbjct: 403 VKKLLNCRRRSKTTEYLVLW---SDDSQTWEPRHNILDKRLI 441
>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 322 VXKILDSXKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 447
V K+L+ + YL+ W S DS TWEP + LI
Sbjct: 972 VKKLLNCRRRSKTTEYLVLW---SDDSQTWEPRHNILDKRLI 1010
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 100 DDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNNDD 216
+DD +TN NDD N + T++ D+ NDD
Sbjct: 98 NDDNEKNTNDKNNNDDSNENTNDDNDKNTNDDNDKKNDD 136
>SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 91 NRTDDDVXSSTNGSLLNDDQT-ATENKTVESVTDESVDQNND 213
+ DDD S NG+ NDD + EN S ++ V NND
Sbjct: 20 DNNDDDYGSDNNGNDNNDDDDGSNENDDDGSDENDYVGDNND 61
>SB_54157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 79 KISKNRTDDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNNDD 216
+++ + D + +S++G L+NDD N + D+ D ++DD
Sbjct: 62 ELNSDGNDFEKGASSSGMLMNDDDDDDYNDDEDDNDDDDDDDDDDD 107
>SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 91 NRTDDDVXSSTNGSLLNDDQT-ATENKTVESVTDESVDQNND 213
+ DDD S NG+ NDD + EN S ++ V NND
Sbjct: 20 DNNDDDYGSDNNGNDNNDDDDGSNENDDDGSDENDYVGDNND 61
>SB_56132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = +1
Query: 55 LLIKFIMRKISKNRTDDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDFSN 225
+++ +M I + D+D + +G +DD T + +S D+ D ++D+ N
Sbjct: 7 MMMMMMMILIKNDDADNDKDNDNDGDDDDDDYTCGDGDNDDSSNDDDDDDDDDEDDN 63
>SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 82 ISKNRTDDDVXSSTNGSLLNDDQTATENKTVESVT--DESVDQNNDDFS 222
+S N DD V S +NG+ D +N +V+S T ++SV N DD S
Sbjct: 77 VSDNGNDDSVDSDSNGNDYVSDNDDDDN-SVDSDTYGNDSVIGNGDDDS 124
>SB_44597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 100 DDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNND 213
DD V +N + DD +N +E V D+SVD +N+
Sbjct: 102 DDSVDDDSNIEDVYDDSVDDDN-NIEDVYDDSVDDDNN 138
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 91 NRTDDDVXSSTNGSLLNDDQTATENK---TVESVTDESVDQNNDD-FSN 225
N DD++ + +G++ NDD +N T+++ D VD +DD F N
Sbjct: 62 NDDDDNINNDDDGNIDNDDDGNIDNDDDGTIDNDDDGYVDNVDDDNFDN 110
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 214 HHCFDRRFHQLQIRQFCSPSQFDRHLTKIH 125
HHC + +L + FC P +H++ +H
Sbjct: 3749 HHCRPSKTCELCSKMFCRPEYVAKHVSMVH 3778
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 91 NRTDDDVXSSTNGSLLNDDQTATENK---TVESVTDESVDQNNDD-FSN 225
N DD++ + +G++ NDD +N T+++ D VD +DD F N
Sbjct: 45 NDDDDNINNDDDGNIDNDDDGNIDNDDDGTIDNDDDGYVDNVDDDNFDN 93
>SB_5412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 100 DDDVXSSTNGSLLNDDQTATENKTVESVTDESVDQNND 213
DD V +N + DD +N +E V D+SVD +N+
Sbjct: 102 DDSVDDDSNLEDVYDDSVDDDN-NIEDVYDDSVDDDNN 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,990,609
Number of Sequences: 59808
Number of extensions: 214855
Number of successful extensions: 1001
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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