Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E02
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...   124   1e-29
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    30   0.33 
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    28   1.0  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   4.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   5.4  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   7.1  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   7.1  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   9.4  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score =  124 bits (299), Expect = 1e-29
 Identities = 56/112 (50%), Positives = 76/112 (67%)
 Frame = +1

Query: 313 SKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVQIKVGPXTKDIANL 492
           +K  MR+V +P HR TPL+  W K++ P+VEHLLLQVR NTK+R+V+++    TKD   L
Sbjct: 77  AKPQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGAL 136

Query: 493 QKAADFVKAFIYGFEVXXXXXXXXXXXXFVESFXVKDVKTLNGDHLSXAIGR 648
           QK  DFV+AF  GF++            ++++F +KDVKTL GDHLS AIGR
Sbjct: 137 QKGMDFVQAFALGFDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGR 188


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 82  IKFHLNDEPSHKMETENISVDDFLPAKKTVKL-KNIKRKATDDTGDGMEVEEPTI 243
           I+ H+ND PS K + +++ + D++ +     L K+IK+    DT   ++VE   I
Sbjct: 10  IEEHMNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKK----DTKSFLDVEHGEI 60


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 234 LFNLHTISGVICSFALYIFKLHRLFSRQKIINTY 133
           +F+++ I G+I S+ L IF++ RL S Q +  +Y
Sbjct: 27  IFSVYIIIGLIISYLLQIFRIVRLGSSQGLSFSY 60


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 118 METENISVDDFLPAKKTVKLKNIKRKATDDTGDGMEVEEPT 240
           ++  N   D F+P  KT  L N+      +TG+ +   EPT
Sbjct: 427 IDPSNQPSDQFIPLLKTCALCNLSTVNQTETGEWVVKGEPT 467


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 246  PNCGLFNLHTISGVICSFALYIFKL 172
            P  G+FN + I  V+  FA++I  L
Sbjct: 1051 PQAGIFNTYIIGSVLGQFAIHIVTL 1075


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 227 LKSPQLGKAIQRSLX--GIEKNIKKVXILMRVKLQCEKLRSQLTDI 358
           L+   L KAI R L   GIEKN   + IL  ++  C++   +  D+
Sbjct: 36  LEETLLLKAICRGLRPVGIEKNFYMIGILREIRDGCKRSTIKAQDV 81


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 379 LKIFTPIVEHLLLQVRFNTKTRNVQIKVGPXTKDIANLQKAADFVKA 519
           LK FTP++ HL   V  N          G  T    +  + ADF KA
Sbjct: 249 LKDFTPLIHHLTNAVAKNFSANVTLAAYGSPTMG-ESYDEVADFAKA 294


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 55  YNLN*YLITIKFHLNDE--PSHKMETENISVDDFLP 156
           +N + + ++I+  LN +  PSH  +   + +DDF+P
Sbjct: 343 FNFSPFELSIRPDLNQKLIPSHARDALPVKLDDFVP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,006
Number of Sequences: 5004
Number of extensions: 40967
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)