Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E02
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3)                 78   5e-15
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)                    27   9.9  
SB_12527| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.9  

>SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3)
          Length = 331

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
 Frame = +1

Query: 316 KVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVQIK---VGPXTKDIA 486
           K   RK+ VP+HRYTPLKE+W+KIFTP+VEHL LQ+RFN  +R+V+I+   +   T   A
Sbjct: 245 KSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHVEIRAFSIRYPTAPSA 304

Query: 487 NLQKAADFVKAFI 525
           N   A+D + +F+
Sbjct: 305 NPVYASDALNSFV 317


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 370 ESWLKIFTPIVEHLLLQVRFNTKTRNVQIKVGPXTKDIANLQKAADFVKAFIY 528
           E  L I  P  EHLL  VRF    R V     P T  +   ++    +  F++
Sbjct: 575 EKRLIITFPYEEHLLRSVRFYLVFRGVGSSASPDTTGVVYFRQDVSNIDLFVF 627


>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
          Length = 465

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 364 LKESWLKIFTPIVEHLLLQVR 426
           L+ +WL+ F P+ EHLL +++
Sbjct: 184 LRSTWLQSFYPVAEHLLERIQ 204


>SB_12527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 136 SVDDFLPAKKTVKLKNIKRKATDDTGDGMEV 228
           S+DDFL AK  ++ +N  R   D  G+G+++
Sbjct: 76  SIDDFLCAKLGIQERNAIRHKRDFPGEGIQL 106


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 515  FTKSAAFCKFAISFVXGPTFICTFLVFVLNLTCSNKCSTIGVKIFS-QLSLSGVYL 351
            F    AFC FA+S      ++C   +F L+++    C    + IF+  +SL  +YL
Sbjct: 1966 FLYLCAFCIFALSVSLRYLYLCAICIFALSVSLRYIC-LYAICIFALSVSLRFLYL 2020


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,238,497
Number of Sequences: 59808
Number of extensions: 286649
Number of successful extensions: 576
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)