Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D24
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    73   1e-14
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    69   3e-13
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   0.44 
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    24   7.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.6  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 73.3 bits (172), Expect = 1e-14
 Identities = 39/69 (56%), Positives = 44/69 (63%)
 Frame = +1

Query: 169 CGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 348
           CG     L+GI   RP E +RL + KKTV+R YGG L    VK RIVRAFLIEEQKIVK 
Sbjct: 44  CGDTGVPLQGIPALRPREFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQ 103

Query: 349 LKAQQASTK 375
              Q +S K
Sbjct: 104 KLKQLSSQK 112



 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNQRRIVRTPG 118
           M QR+T+RRRL+YNT+SN+ RI++TPG
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPG 27


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 68.9 bits (161), Expect = 3e-13
 Identities = 38/69 (55%), Positives = 44/69 (63%)
 Frame = +1

Query: 169 CGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 348
           CG     L+GI   RP E +RL + +K V+R YGG L    VK RIVRAFLIEEQKIVK 
Sbjct: 44  CGDTGVPLQGIPALRPREFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK- 102

Query: 349 LKAQQASTK 375
            K +Q S K
Sbjct: 103 QKLKQMSQK 111



 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNQRRIVRTPG 118
           M QR+T+RRRL+YNT+SN+ RI++TPG
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPG 27


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 312 SDNALLDTFMAEDTTINTFH 253
           SDNA +DT ++ED TIN  H
Sbjct: 83  SDNAAIDTDISEDETINQRH 102


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 236 QRRERSAGLAGWIPRSLLLH*PQPWDLLGLFYILINQAAS 117
           +R+E +     W+   L L  P+  D LG F +  ++  S
Sbjct: 269 RRKENNISATSWVGEKLPLKSPRKLDPLGKFQVHCDEEVS 308


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 238 YRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVLK 354
           +R+K   R+ G ++C  C+K+     F+   Q  +KV +
Sbjct: 76  FRRKHHCRICGKIICKYCLKE--APGFIFRLQGSIKVCR 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,946
Number of Sequences: 5004
Number of extensions: 29360
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)