Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D24
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 74 5e-14
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 74 5e-14
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 73 1e-13
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 29 1.3
03_02_0383 + 7966929-7968951,7969085-7969104 28 3.0
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 27 3.9
12_02_1134 - 26373018-26373389,26373506-26373595,26374265-263743... 27 6.9
08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418 27 6.9
09_01_0067 + 1001137-1002708,1003476-1003529 26 9.1
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 26 9.1
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 73.7 bits (173), Expect = 5e-14
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Frame = +1
Query: 154 RRSQG--CGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFL 321
+R+ G C K++GI RPAE RSRL ++TV R YGGVL V++RI+RAFL
Sbjct: 37 KRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFL 96
Query: 322 IEEQKIV-KVLKAQQASTKSA 381
+EEQKIV KVLK Q+ KSA
Sbjct: 97 VEEQKIVKKVLKIQKTKDKSA 117
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPK 166
MVQRLT+R+R SY TKSNQ R+V+TPG L KK PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPK 43
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 73.7 bits (173), Expect = 5e-14
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Frame = +1
Query: 154 RRSQG--CGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFL 321
+R+ G C K++GI RPAE RSRL ++TV R YGGVL V++RI+RAFL
Sbjct: 37 KRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFL 96
Query: 322 IEEQKIV-KVLKAQQASTKSA 381
+EEQKIV KVLK Q+ KSA
Sbjct: 97 VEEQKIVKKVLKIQKTKDKSA 117
Score = 51.6 bits (118), Expect = 2e-07
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPK 166
MVQRLT+R+R SY TKSNQ R+V+TPG L KK PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPK 43
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 72.5 bits (170), Expect = 1e-13
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Frame = +1
Query: 154 RRSQG--CGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFL 321
+R+ G C K++GI RPAE RSRL ++TV R YGGVL V++RI+RAFL
Sbjct: 37 KRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFL 96
Query: 322 IEEQKIV-KVLKAQQASTKSA 381
+EEQKIV KVLK Q+ K+A
Sbjct: 97 VEEQKIVKKVLKIQKTKDKTA 117
Score = 51.6 bits (118), Expect = 2e-07
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPK 166
MVQRLT+R+R SY TKSNQ R+V+TPG L KK PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPK 43
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 151 PRRSQGCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQR 303
P Q CG C +L+ + E + C +T + +CH CV +R
Sbjct: 1660 PLMQQSCGYCADELKDTR-----EAPKPCCNPQTEGGLCSNEMCHNCVSER 1705
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 91 SKKNSKDTGLAAWFISM*KSPRRSQGCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYG 270
S+++S G W+I + R G+ K G + P+ R +CY + G
Sbjct: 491 SRRSSNGNGSIDWWIDGVRRSSRDWASGEFVPKSGGAVSSTPSMRGTVCY--VAPEYGGG 548
Query: 271 GVLCHKC 291
G L KC
Sbjct: 549 GPLSEKC 555
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 36 KWC-SGLHSGXDCRTTQNQIKEE**GHRAGRLVYQYVKKPKKI 161
KW SG HS DC+ + QI+ G++ + KKP K+
Sbjct: 577 KWYNSGAHSTNDCKVFRQQIQA---AIEGGKIKFDDSKKPMKV 616
>12_02_1134 -
26373018-26373389,26373506-26373595,26374265-26374323,
26375372-26375381
Length = 176
Score = 26.6 bits (56), Expect = 6.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 112 TGLAAWFISM*KSPRRS--QGCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCH 285
+G +A + KS RR+ + G+ K+ I A PA++ + +KK K G +
Sbjct: 12 SGCSATSLGQPKSKRRTGDKARGEKKALKVKINLASPAKKIKKSSKKKGKKGTVAGRIGR 71
Query: 286 KCVKQRIVRA-FLIEEQK 336
KC R + FL E K
Sbjct: 72 KCTLSRDSKGRFLPRESK 89
>08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418
Length = 202
Score = 26.6 bits (56), Expect = 6.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 39 WCSGLHSGXDCRTTQNQ 89
WC+G HSG D R Q
Sbjct: 60 WCTGTHSGADMRARPRQ 76
>09_01_0067 + 1001137-1002708,1003476-1003529
Length = 541
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 187 KLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 345
+LRG+ + P S LC +K +Y G +C I + ++ KI++
Sbjct: 201 RLRGLAQSEPVAVSSLCLHSLCLKELYNG----QCFSSLITNSPNLKTLKIIR 249
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 217 QV*LAGYHGVCSCTDHSLGIF 155
Q L +G C C DHSL IF
Sbjct: 1036 QTTLIDMYGKCCCFDHSLAIF 1056
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,179
Number of Sequences: 37544
Number of extensions: 208405
Number of successful extensions: 467
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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