Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D24
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07) 64 5e-11
SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18) 30 0.57
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 29 1.8
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 3.6
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15) 27 4.0
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 26 9.3
SB_803| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
Length = 58
Score = 63.7 bits (148), Expect = 5e-11
Identities = 32/52 (61%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Frame = +1
Query: 211 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLKAQQ 363
RP + + +KTV R YGG C CVK+RI+RAFLIEEQKI V+VLKAQQ
Sbjct: 2 RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIVVRVLKAQQ 53
>SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)
Length = 530
Score = 30.3 bits (65), Expect = 0.57
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 111 HRAGRLVYQYVKKPKKIPRLWSV 179
HRA R V Q +P+K PR W V
Sbjct: 271 HRAARFVMQKYSRPRKEPRKWEV 293
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 62 RRLSYNTKSNQRRIVRTPGWPLGLSV 139
RR++ T SN R++RTPG + + V
Sbjct: 159 RRITKTTNSNSTRLIRTPGQSIHIKV 184
>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 190 LRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 348
++G++ R + S C R V +VY +C +C + V+ + E ++ KV
Sbjct: 201 VKGVRDVRVNKVSERCLRGACVYKVYERCVCTRCTRGACVQG--LREVRVYKV 251
>SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 24.6 bits (51), Expect(2) = 3.6
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 1 CFPCSPAVKKLENGAAAYIQAXTVVQHKIKSKKNSKDTG 117
C C+P K ++ I+ VV + S S+D G
Sbjct: 417 CDKCAPGYKSTKSNIVPCIETPNVVMSQESSTPRSRDQG 455
Score = 21.4 bits (43), Expect(2) = 3.6
Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Frame = +1
Query: 148 SPR-RSQGCGQCK 183
+PR R QGC QC+
Sbjct: 448 TPRSRDQGCSQCR 460
>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
Length = 857
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 246 ENSETCLWWCPLP*MCQATHCQSLPH*RTKNCEGPQGTT 362
++ + LW P+P Q + C+S P T E P TT
Sbjct: 223 KHPDLMLWRKPVPKTDQQSECESSPGANTDRLESPARTT 261
>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 67 TVVQHKIKSKKNSKDTGLAAWFISM*KSPRRSQGCGQCKSKLRGIQPARPAERSRLCYRK 246
+ + +++K+ NSK T + SPR+ Q + + I+ + LC+R+
Sbjct: 67 STMNYRLKNALNSKVTATQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHRE 126
Query: 247 KTVKRVYGG 273
K V GG
Sbjct: 127 KPVGHFSGG 135
>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 209 AGWI--PRSLLLH*PQPWDLLGLFYILINQAASPVSLLFFFD 90
AGW+ P S+ WD+ L +LIN A PV + FF D
Sbjct: 347 AGWVIHPTSIFR---LYWDMWVLLLLLINLFALPVLISFFAD 385
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 288 MCQATHCQSLPH*RTKNCEGPQGT 359
+CQ HC LP R K+C+ P T
Sbjct: 115 VCQDDHCACLPCWRGKSCDQPDLT 138
>SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 286 YGRGHHH-KHVSLFSYGSKDGNVQQV*LAGYHGVCSCTDHSLGIF 155
YG H K + L YG+ G V+++ L GY H+L F
Sbjct: 238 YGTSHGLVKEIDLRGYGTSHGPVKEIELRGYGTSYRGPSHTLTFF 282
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 2 AFLAHQLSKSLKMVQRLTFRRRLSYNTKSNQRR 100
A L +L+KS K ++ R+R YNT +++RR
Sbjct: 553 AELQTRLAKSAKELEEELERKREDYNTAADERR 585
>SB_803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +3
Query: 264 LWWCPLP*M--CQATHCQSLPH 323
LWW L M C+A H SLPH
Sbjct: 230 LWWPKLENMHNCEACHGSSLPH 251
>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 134 INQAASPVSLLFFFDLILCC 75
++ A+ P+SL F D++LCC
Sbjct: 465 VSHASWPISLQTFKDILLCC 484
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,802,569
Number of Sequences: 59808
Number of extensions: 239730
Number of successful extensions: 573
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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