Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D24
(386 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 64 3e-11
U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical pr... 28 2.0
U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical p... 27 6.1
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 26 8.1
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 26 8.1
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 26 8.1
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 26 8.1
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 26 8.1
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 26 8.1
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 26 8.1
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 64.1 bits (149), Expect = 3e-11
Identities = 35/66 (53%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +1
Query: 169 CGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-K 345
C KL GI PARP L ++TV R YGG L VK+RI RAFL+EEQKIV K
Sbjct: 44 CRDTGVKLHGITPARPIALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIVNK 103
Query: 346 VLKAQQ 363
V+K Q+
Sbjct: 104 VIKHQK 109
Score = 49.6 bits (113), Expect = 8e-07
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPK 166
M R+T+RRRLSYNT SN++R+V+TPG L + KK + PK
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPK 43
>U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical
protein ZK1290.5 protein.
Length = 321
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 123 RLVYQYVKKPKKIPRLWSVQEQTPWYPAS*TC 218
++ +Y K P +I WS+Q+ P P S C
Sbjct: 207 KIASKYQKSPAQICLRWSIQQNVPTVPKSTDC 238
>U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical
protein C27H5.6 protein.
Length = 322
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 261 TFHCFLTVAKTGTFSRSSW 205
TFHC LTV + +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 362 CCALRTFTIFCSSMRKALTMRCLTHL 285
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 362 CCALRTFTIFCSSMRKALTMRCLTHL 285
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 362 CCALRTFTIFCSSMRKALTMRCLTHL 285
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1c protein.
Length = 1131
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 362 CCALRTFTIFCSSMRKALTMRCLTHL 285
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1b protein.
Length = 1118
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 362 CCALRTFTIFCSSMRKALTMRCLTHL 285
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1a protein.
Length = 1140
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 362 CCALRTFTIFCSSMRKALTMRCLTHL 285
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 184 SKLRGIQPARPAERSRLCYRKKTVKRVYGGVL 279
+KL +P RP ++ R KT+K YG VL
Sbjct: 584 TKLLAKKPRRPIKKRVKTQRTKTIKLHYGDVL 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,656,219
Number of Sequences: 27780
Number of extensions: 176963
Number of successful extensions: 396
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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