Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D23
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   3e-41
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.96 
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   0.96 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.3  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      28   3.9  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   5.1  
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)                 27   6.8  
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    27   9.0  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               27   9.0  
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  164 bits (399), Expect = 3e-41
 Identities = 78/95 (82%), Positives = 87/95 (91%), Gaps = 2/95 (2%)
 Frame = +1

Query: 193 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 366
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 367 HKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 471
           HKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 162 YSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 311
           Y P   +SY + CA T+   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 192 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 311
           S C     GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 127 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 228
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -2

Query: 492 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLK 352
           FY  L L V D    L  G+D    DLF   R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 267  GPSPHANQDPAYHHP 311
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
          Length = 198

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 105 GSRCXVRQRHRETPGRGLPYSPHQDHSYFSQCALTREGL 221
           GSR   R RHR  PGR  P  P    S+ ++ A  R GL
Sbjct: 2   GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 499 KNILLAALPTRRRWSPQP 446
           +N+++  LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197


>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 277 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 405
           R+PT    + T +K PC     TW R +    KR + +H P+ +
Sbjct: 22  RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 58   FD*KVVYLGRNSTSNMAAAVXSGKD-IEKPQAEVSPIHRIRITLTSRNVRSLEK 216
            FD K VYL RN+T+   AA+ S K+ I + QA +S +      + +R + +L K
Sbjct: 1396 FD-KKVYLLRNATTKAEAAIKSQKEQISRLQARLSAMEEANENV-NRKLDTLNK 1447


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 85   RNSTSNMAAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLING 240
            ++STSN   +   G     PQ E     +I  T+ SR+   +EK  +    G
Sbjct: 2668 QSSTSNFKKSTSMGNLNRNPQEESRAKRKISDTVVSRSAAIVEKTSSGFYKG 2719


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 82  GRNSTSNMAAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVR 204
           G  S SN  +   +  D+E PQ  ++ +  + I + S+N++
Sbjct: 54  GSGSGSNSGSGSGAAADLEDPQTPLTHLRPLEILVPSKNLK 94


>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
 Frame = +1

Query: 121 SGKDIEKPQAEVSPIHRIRITLTSR-NVRSLEKVCADLINGAKKQKLRVKGPVRMPTKIL 297
           S +  +K   +VSP+ RI+   TSR ++ S      DL +   K K   K P+  P    
Sbjct: 124 STRSSKKDPDKVSPLSRIKSPATSRVSLDSDSDDGNDLPSVFTKTKPVWKPPITTPQVNS 183

Query: 298 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 429
                  P    + + D  ++R HKR+ D +S      ++ S N
Sbjct: 184 DSEEEDLPSYLSTNSQDT-KIRTHKRIADNNSKISCRSKVDSQN 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,245
Number of Sequences: 59808
Number of extensions: 339979
Number of successful extensions: 770
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)