Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D22
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   159   3e-40
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   158   5e-40
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   1.7  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.2  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    27   2.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   3.9  
SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.8  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  159 bits (386), Expect = 3e-40
 Identities = 77/128 (60%), Positives = 94/128 (73%)
 Frame = +3

Query: 210 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 389
           W GS+K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 390 EKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIXKFLDGL 569
           E+    +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDI KFLDG+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGI 177

Query: 570 YVSEKTTV 593
           YVSE+  +
Sbjct: 178 YVSERGNI 185



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 20/45 (44%), Positives = 36/45 (80%)
 Frame = +2

Query: 41  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 175
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELK 47


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  158 bits (384), Expect = 5e-40
 Identities = 76/128 (59%), Positives = 95/128 (74%)
 Frame = +3

Query: 210 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 389
           W GS+K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 390 EKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIXKFLDGL 569
           E+    +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDI KFLDG+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGI 177

Query: 570 YVSEKTTV 593
           YVSE+  +
Sbjct: 178 YVSERGNI 185



 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 19/45 (42%), Positives = 33/45 (73%)
 Frame = +2

Query: 41  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 175
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMK 47


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +3

Query: 483 LEDVSSSAALIQQSTTVKNKDIXKFLDGLYVSEKTT 590
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 438 NSPKQKDELIIEGNSLEDVSSSAALIQQS 524
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 211 HFSTFRRARVYHA--NVNSQVFEVPFENSA 128
           H++ +R AR YHA  NV  Q  +V F   A
Sbjct: 48  HYAKYRSARFYHAFRNVRQQYAQVKFNMDA 77


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 623 YLMFLYVM*HNSCFLRYIKTIQELXDILILD 531
           Y  F++ + H S  L Y KT++E+  + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817


>SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 120 KGPAEFSKGTSNXXXXXXXXXXXXXXKVEKWFGSKKELAAVRT 248
           K P  F + T N              KV+K FGS   ++ V T
Sbjct: 46  KNPTPFGRSTKNSVYEYETVTPYSRFKVDKKFGSATSVSPVHT 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,237
Number of Sequences: 5004
Number of extensions: 51040
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)