Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D22
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        112   2e-25
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               33   0.19 
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 30   1.8  
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   29   4.1  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                28   5.4  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          27   9.5  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_15364| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  112 bits (270), Expect = 2e-25
 Identities = 46/75 (61%), Positives = 61/75 (81%)
 Frame = +3

Query: 198 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 377
           +V+ WF S+KELA V+T+ +H+ENMIKGV  G++YKMRAVYAHFPIN    E  +++E+R
Sbjct: 610 RVDVWFASRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVR 669

Query: 378 NFLGEKYIXRVKMAP 422
           NFLGEKY+ RV+M P
Sbjct: 670 NFLGEKYVRRVRMRP 684



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 31/57 (54%), Positives = 41/57 (71%)
 Frame = +2

Query: 11  GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 181
           GSC+     MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V
Sbjct: 548 GSCLSCIVAMKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKV 604


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +3

Query: 507 ALIQQSTTVKNKDIXKFLDGLYVSEKTTVVLHD 605
           ALIQQST VKNKDI KFLDG+YVSEKTT+V  D
Sbjct: 2   ALIQQSTKVKNKDIRKFLDGVYVSEKTTIVPMD 34


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 354 GNSIIEIRNFLGEKYIXRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 527
           G  ++ +++ LG++    +      T +       K+EL    +SLE+VS   A +Q S 
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255

Query: 528 TVKNKDIXKFLDGLYVSEK 584
             K+++I      L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 393 KYIXRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIXKFLDGL 569
           K   R ++A G+   ++P Q + LI   G   EDV S+ +L +  +      + KF DG 
Sbjct: 25  KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83

Query: 570 YVSEKTTV 593
           +V ++ T+
Sbjct: 84  FVKKRNTI 91



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 95   VKSRLVTVKGPRGVLKRNFKHL 160
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 478 LPSMISSSFCFGELTTVTPGAIFTLXMYFSPKKLRISIIE 359
           +P  I S    G+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 20  VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 133
           ++ +  +K++  + K K  DG+ VH K+   TV+ PRG
Sbjct: 98  LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 52   SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 159
            S+ ++    R Y PC I SG++  APR    +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400


>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 508 AAELETSSKELPSMISSSFCFGELTTVTPGAIFTLXMYFSPKKLRISIIEL 356
           AAE++TS   L  + S S C      VT   IFT  MY  P+++ ++   L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284


>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 285 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXRVKMAPGVTVVNSPKQ 452
           T+G    MR  +   P + VTTE   ++++   +GE+ +      P  T++ +P Q
Sbjct: 384 TRGDHVTMRGEHPTTPASSVTTEDKDLLQML-AVGEQGLANKGTVPQSTLITTPIQ 438


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +3

Query: 222  KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIEIRNFLGE 392
            K+ LAA + V +   N+ KGVT+G    K R V    PI    V T+G  + +       
Sbjct: 948  KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQGMPVTPG 1007

Query: 393  KYIXR-VKMAPGVTVVNS-PKQKDELIIEG 476
            + + + + + PG  V    P  +  ++ +G
Sbjct: 1008 RVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037


>SB_15364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 393 KYIXRVKMAPGVTVVNSPKQKDELIIEGNSLE-DVSSSAALIQQSTTVKNKDIXKFLDGL 569
           K+  R +M      V + +++++  ++G   E D  S     +Q  +V NKD  K +D  
Sbjct: 6   KHEIRSEMLGWKLSVTTEEKEEDAFVDGVFKEFDRLSETVFRKQEASVANKDCHKIVDLW 65

Query: 570 YVSEKTTVVLHD 605
            + E++   +HD
Sbjct: 66  PMIERSMKEIHD 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,169
Number of Sequences: 59808
Number of extensions: 394783
Number of successful extensions: 966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)