Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D22
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 192 2e-49
AC006633-1|AAK68374.1| 113|Caenorhabditis elegans Hypothetical ... 33 0.22
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 28 6.3
Z83239-5|CAB05809.1| 160|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z69794-5|CAA93682.1| 506|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z69789-6|CAA93652.1| 506|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 8.4
U56860-2|AAA98706.3| 225|Caenorhabditis elegans Defective phary... 27 8.4
U53147-5|AAA96116.1| 153|Caenorhabditis elegans Hypothetical pr... 27 8.4
EF219472-1|ABO25756.1| 127|Caenorhabditis elegans transcription... 27 8.4
AY766389-1|AAV34757.1| 170|Caenorhabditis elegans PHA-2 protein. 27 8.4
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 192 bits (467), Expect = 2e-49
Identities = 88/136 (64%), Positives = 107/136 (78%)
Frame = +3
Query: 198 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 377
+V KWFG +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN +GN +EIR
Sbjct: 54 RVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIR 113
Query: 378 NFLGEKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIXKF 557
NFLGEK + RV + GV S QKDE+++EGN ++ VS +AA IQQST VK KDI KF
Sbjct: 114 NFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKF 173
Query: 558 LDGLYVSEKTTVVLHD 605
LDG+YVSEKTT+V D
Sbjct: 174 LDGIYVSEKTTIVPTD 189
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/48 (41%), Positives = 34/48 (70%)
Frame = +2
Query: 38 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 181
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ +
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERI 48
>AC006633-1|AAK68374.1| 113|Caenorhabditis elegans Hypothetical
protein F35B3.3 protein.
Length = 113
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -1
Query: 596 HNSCFLRYIKTIQELXDILILDCSRLLNESSRARDIFQR 480
+N+C LR IK + L +L + SRL N SR RD+F++
Sbjct: 25 NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 605 VM*HNSCFLRYIKTIQELXDILILDCSRLLNESSRARD 492
++ HN +L + KT L DIL+ +CS+ E + D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217
>Z83239-5|CAB05809.1| 160|Caenorhabditis elegans Hypothetical
protein T09F5.9 protein.
Length = 160
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 225 FWIRTISQPSGERGFTMRMSTAKCLKFL 142
F I +IS PSG FT+ +ST++C KF+
Sbjct: 16 FPIASISCPSG---FTLLVSTSRCAKFI 40
>Z69794-5|CAA93682.1| 506|Caenorhabditis elegans Hypothetical
protein F17H10.1 protein.
Length = 506
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 271 MFSTCEQTVLTAASSFLDPNHFSTFRRARVYH 176
M T E ++ A S + PN + F + VYH
Sbjct: 437 MVETVESNIIANAKSIVVPNKSAVFEQGAVYH 468
>Z69789-6|CAA93652.1| 506|Caenorhabditis elegans Hypothetical
protein F17H10.1 protein.
Length = 506
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 271 MFSTCEQTVLTAASSFLDPNHFSTFRRARVYH 176
M T E ++ A S + PN + F + VYH
Sbjct: 437 MVETVESNIIANAKSIVVPNKSAVFEQGAVYH 468
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 166 NSQVFEVPFENSAGPFNCHQTRFHMDR 86
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 166 NSQVFEVPFENSAGPFNCHQTRFHMDR 86
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>U56860-2|AAA98706.3| 225|Caenorhabditis elegans Defective pharynx
development protein2 protein.
Length = 225
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 621 FNVFICHVAQQLFSQIHKD 565
FN +ICHV+QQL +Q+ ++
Sbjct: 73 FNPWICHVSQQLAAQLSQN 91
>U53147-5|AAA96116.1| 153|Caenorhabditis elegans Hypothetical
protein C01B7.5 protein.
Length = 153
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 193 RARVYHANVNSQVFEVPFENSAGPFNC 113
R ++ V + E+P EN A FNC
Sbjct: 98 RRKIIQLKVRRRALEIPAENEASVFNC 124
>EF219472-1|ABO25756.1| 127|Caenorhabditis elegans transcription
factor PHA-2 protein.
Length = 127
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 621 FNVFICHVAQQLFSQIHKD 565
FN +ICHV+QQL +Q+ ++
Sbjct: 35 FNPWICHVSQQLAAQLSQN 53
>AY766389-1|AAV34757.1| 170|Caenorhabditis elegans PHA-2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 621 FNVFICHVAQQLFSQIHKD 565
FN +ICHV+QQL +Q+ ++
Sbjct: 18 FNPWICHVSQQLAAQLSQN 36
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,193,229
Number of Sequences: 27780
Number of extensions: 293670
Number of successful extensions: 713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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