Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D18
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1574 + 38337669-38338196                                         32   0.29 
04_01_0059 - 605084-606679                                             29   2.1  
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703...    28   3.6  

>01_06_1574 + 38337669-38338196
          Length = 175

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 159 AESVCHVSLYHLRNWRINSPGARSSRGANYGLISRCLCHFC 37
           A S+C    YH+R  R     +   +G  Y     CLC  C
Sbjct: 37  AHSLCPYKFYHIRCLRYEQIASSEQQGNEYWYCPSCLCRVC 77


>04_01_0059 - 605084-606679
          Length = 531

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +1

Query: 112 SPVSKMIQTNMTNRFCICSADTTCAITEDDTXVHAYIHRCTRIDPDSXXFCMLTTYC 282
           SP S  +  N+     I  A       E    VHAYI R    D      C++  YC
Sbjct: 241 SPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYC 297


>07_03_1555 -
           27669981-27670148,27670232-27670315,27670349-27670360,
           27670683-27670761,27670840-27671078,27671167-27671260,
           27671342-27671484,27671688-27671786,27671870-27671998,
           27672123-27672197,27672308-27672520,27672581-27672676,
           27673282-27673380,27673600-27673839,27674212-27674322,
           27674429-27674626,27674720-27674835,27675076-27675193,
           27675761-27675866,27675972-27676030,27676259-27676388,
           27676730-27676887,27677672-27677887,27677972-27678082,
           27678313-27678472,27679364-27679509,27679603-27679695,
           27680610-27680706,27681224-27681294,27681407-27681505,
           27682037-27682168,27682287-27682729,27683252-27683564,
           27684301-27684549
          Length = 1631

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 282 AISCQHTKXXRVGINASASVNVRVHXCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRIN 106
           A+   H    + G+  SAS+      C      AC +G   A ++C +++L   R WR++
Sbjct: 722 AVGAIHQHLIQNGLRMSASIVADTAQCFSTHQFACLIG-YGASAICPYLALETCRQWRLS 780

Query: 105 S 103
           +
Sbjct: 781 N 781


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,401
Number of Sequences: 37544
Number of extensions: 186398
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)