Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D18
         (494 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071278-1|AAL48900.1|  347|Drosophila melanogaster RE30702p pro...    31   0.65 
AE014297-3800|AAN14054.2|  881|Drosophila melanogaster CG31439-P...    31   1.1  
AE014134-1061|AAF52351.2|  471|Drosophila melanogaster CG13990-P...    29   4.6  

>AY071278-1|AAL48900.1|  347|Drosophila melanogaster RE30702p
           protein.
          Length = 347

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 24/84 (28%), Positives = 28/84 (33%)
 Frame = +1

Query: 34  TAEMTQASGNKPIICAPTTPCAWTVYSPVSKMIQTNMTNRFCICSADTTCAITEDDTXVH 213
           T   T AS      CAPTT    T  +P +       T   C  +  TTCA T   T   
Sbjct: 127 TTTCTPASVTTTTTCAPTTT---TTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAP 183

Query: 214 AYIHRCTRIDPDSXXFCMLTTYCT 285
                C      +      TT CT
Sbjct: 184 TTTTTCAPTTTTTCTPTTTTTLCT 207


>AE014297-3800|AAN14054.2|  881|Drosophila melanogaster CG31439-PA
           protein.
          Length = 881

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +1

Query: 16  QQKTPGTAEMTQASGNKPIICAPTT-PCA-WTVYSPVSKMIQTNMTNRFCICSADTTCAI 189
           QQ    TA+    +   P  CA TT PC   T  +P S +I +  T      +  TTC  
Sbjct: 89  QQSVRDTAQPCNGATTTPPPCATTTPPCTKTTTQTPCSGIITSTTTTPASTTTTTTTCTP 148

Query: 190 TEDDT 204
           T   T
Sbjct: 149 TTTTT 153


>AE014134-1061|AAF52351.2|  471|Drosophila melanogaster CG13990-PA
           protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
 Frame = +1

Query: 10  PKQQKTPGTAEMTQASGNKPIICAPTT-----PCAWTVYSPVSKMIQTNMTNRFCICSAD 174
           P    T      T  +      CAPTT     P   T  +P +       T   C  +  
Sbjct: 239 PTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTT 298

Query: 175 TTCAITEDDTXVHAYIHRCTRIDPDSXXFCMLTTYCT 285
           TTCA T   T        C      +    + TT CT
Sbjct: 299 TTCAPTTTTTCAPTTTTTCAPTTTTTCTPGITTTTCT 335


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,191,889
Number of Sequences: 53049
Number of extensions: 334716
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)