Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D18
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   9.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.5  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 347 PVRAAKLHLLYIHYNFHYPFLHVDKYIILHV 439
           P+ +  LHLL+ H++     L   K + L V
Sbjct: 141 PLVSGALHLLFRHFSQRQEVLQAFKQVQLLV 171


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 58  GNKPIICAPTTPCAW 102
           G+K  I A T PC W
Sbjct: 289 GSKVPIDANTKPCTW 303


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 58  GNKPIICAPTTPCAW 102
           G+K  I A T PC W
Sbjct: 289 GSKVPIDANTKPCTW 303


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 58  GNKPIICAPTTPCAW 102
           G+K  I A T PC W
Sbjct: 289 GSKVPIDANTKPCTW 303


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 450 RCMSTCNIIYLSTCKNG 400
           +C +TC +  L T KNG
Sbjct: 66  QCYTTCIMKLLRTFKNG 82


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 347 PVRAAKLHLLYIHYNFHYPFLHVDKYIILHV 439
           P+ +  LHLL+ H++     L   K + L V
Sbjct: 109 PLVSGALHLLFRHFSQRQEVLQAFKQVQLLV 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,783
Number of Sequences: 438
Number of extensions: 2122
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)