Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D16
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 52 5e-08
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 34 0.020
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 29 0.76
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 27 1.8
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 27 2.3
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 7.1
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 7.1
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.1
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 7.1
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 9.3
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.3
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 52.4 bits (120), Expect = 5e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 79 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 258
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60
Query: 259 ECRYGLFDFEY 291
+CRY ++DFE+
Sbjct: 61 DCRYAIYDFEF 71
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 329 KQKLFLMSWCPDTAKVXKKMLYSSSFDALKKS 424
+ K+ +SW PD A + KM+YSSS D L+++
Sbjct: 78 RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRA 109
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 33.9 bits (74), Expect = 0.020
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 323 SKKQKLFLMSWCPDTAKVXKKMLYSSSFDALKK--SLARSSEVHPSDRP 463
SKK L L+S+ P+ A V +KMLY+SS A + +LA+ E + + P
Sbjct: 76 SKKNLLQLISYVPENANVRRKMLYASSRAAFVRCVTLAKLDESYFASTP 124
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 28.7 bits (61), Expect = 0.76
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -1
Query: 418 FQSVERARVQHLLXDLGGVRAPRHQEELLFLASLRRXPGT--GACIQSQTGHI 266
+Q + RA + H + + Q E +F+ LRR PGT G C I
Sbjct: 113 YQVLTRACITHNIRHICTAHHANDQAETIFMRLLRRKPGTWGGLCAMKPVSQI 165
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -1
Query: 571 VSESGFGFVASSCVNAVYWRSVARSFXSTAS*DASERSVAWMYF*TPSKGLFQSVER 401
+ E +G ++ SCV+ YW + + A +R + + + PSK Q +ER
Sbjct: 56 LEEEQWGVLSGSCVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQ-IER 111
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +2
Query: 359 PDTAKVXKKMLY--SSSFDALKKSLARSSEVHPSDRPLGSVSXGRRXEAPRHRSPINSIY 532
PD K K SS+ ++ S + +H P SV A R P + I
Sbjct: 194 PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIP 253
Query: 533 TRARDETEPALRHS 574
R T+P L +S
Sbjct: 254 NRLSPSTQPLLSNS 267
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 106 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 285
K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166
Query: 286 E 288
+
Sbjct: 167 Q 167
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -2
Query: 357 HHDIRKSFCFLLASDVXLALVRVFKVKQAISAFPGTALLQILEELFVF 214
HH S C L + L + + +KQ + + G+ +L++L + +F
Sbjct: 192 HHIRIISKCSLKLKSMVLVSMIIPSIKQTLDFYSGSQILRLLNDFSMF 239
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 305 WHWCVYSKSNRPY--LHSPVPPFCRSSRNCSYSALRSPTVSTSICF 174
W++ Y+ S R Y VPP+CR +R+ + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 442 F*TPSKGLFQSVERARVQHLLXDLGGVRAPRHQEELLF 329
F TP F S+E + LGGV +PR Q LF
Sbjct: 253 FNTPFSSFFASLEETPGSYTAH-LGGVLSPREQTPALF 289
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 124 SPRKWSCKRPKLSHQTPFFDVIHVKITPLTSPTPQT 17
S R+W+ R ++ + + D K P PTP+T
Sbjct: 8 SKRRWNRFRREMCNYSKRLDTFQKKKWPRAKPTPET 43
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 206 ATPNTNSSSRICRRAVPGNADMACLTLNTRTSARXTSEASKKQKLFLMSWCP 361
A + +++ RI PGN + TL + + + +Q F ++WCP
Sbjct: 129 AAVSADATLRIYEAMEPGN--LTYWTLMNEIALMPSPPSRNEQPAFCVNWCP 178
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 88 TVSDACKTTYEEIKKDKKHRYV 153
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 85 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 189
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 497 APRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PL 613
APR R P ++ T A E P + P TR PL
Sbjct: 24 APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,027
Number of Sequences: 5004
Number of extensions: 39243
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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