Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D12
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 2.3
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 26 3.1
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 4.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 4.1
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 25 5.4
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 25 5.4
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 7.2
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 9.5
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 25 9.5
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 194 GDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYTHFAQIYQIVPVPSLFFIGR 373
G++++ D M+++ D V R K L+ +LKS Y H +Y+ V + +I R
Sbjct: 351 GESNVDDGMAASRYDTVKREK-----ERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMR 405
Query: 374 NGTPL 388
G +
Sbjct: 406 LGNKI 410
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 3.1
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +2
Query: 134 IAEAVNLSKQRNTIFVVFIQGDNDLSDEMSST--LNDVVVRSKLSNESNFLAVNLKSGST 307
I ++NL + +++V + D+ LSDE + + + V ++ ++ L+V +
Sbjct: 231 ILNSLNLLTAKPVVYLVNMDQDDYLSDEQEALKGIKEWVEKNSFGDQVIPLSVLFEE--- 287
Query: 308 NYTHFAQIYQIVP---VPSLFFIGRNGTPLEVVCAGVDADNL 424
Q++ + P +G+N E++CAG A NL
Sbjct: 288 ------QLFMLTPEEAAQECASLGKNSQLSEIICAGYSALNL 323
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 416 RRPHQRRPLREEYHSCR 366
R PHQ++PLR E+ R
Sbjct: 426 RSPHQKKPLRVEFRQLR 442
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 4.1
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Frame = +2
Query: 167 NTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNF---LAVNLKSGSTNYTHFAQIYQ 337
N + +V I + L DE L +V R E V L + NYT A
Sbjct: 646 NLVRLVIIDEVHLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLH 705
Query: 338 IVPVPSLFFIGRNGTP 385
+ P LF+ P
Sbjct: 706 VDPKKGLFYFDSTYRP 721
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/75 (22%), Positives = 31/75 (41%)
Frame = +2
Query: 110 TMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVN 289
++R + ++ N+SK R FI NDL ++ D SK +
Sbjct: 57 SLRQFVQQLSVRQNMSKDRREALTYFINSYNDLFHDV--YYGDGRSMSKTEEAQTIVTFT 114
Query: 290 LKSGSTNYTHFAQIY 334
+ S YTH ++++
Sbjct: 115 IGSYLYKYTHPSELF 129
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 128 GSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDV 241
GSI A N+ + +V ++QG D E ST+++V
Sbjct: 205 GSIIAADNILRPGVPEYVKYVQGSLDYRKEYDSTVSNV 242
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 257 LSNESNFLAVNLKSGSTNYTHFAQIYQIVPV 349
L E+++ N+ SGS+N TH VPV
Sbjct: 137 LKFEASWALTNVASGSSNQTHVVVEANAVPV 167
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 66 IKLKNLTEFCD 98
+KL NLTEFCD
Sbjct: 1077 LKLHNLTEFCD 1087
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 227 TLNDVVVRSKLSNESNFLAVNLKSGSTNYTHFAQIYQIVPVP 352
T D + N NF+ + K G+T F + PVP
Sbjct: 7 TKEDFTPKGMWRNFKNFIVIEAKPGTTLAERFLTNEDLYPVP 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,228
Number of Sequences: 5004
Number of extensions: 41419
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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