Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D12
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0609 + 22710442-22713502,22713596-22713948 29 2.4
06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171 29 2.4
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723 29 3.1
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 28 4.1
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 28 4.1
08_02_0070 - 11897089-11898150,11898389-11898644,11898755-118990... 28 5.5
11_06_0125 - 20356683-20357071,20359531-20362285 27 7.2
10_05_0074 - 8865884-8866567,8866612-8866923 27 7.2
01_05_0608 - 23628100-23631486 27 7.2
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 27 9.6
10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630 27 9.6
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 107 LTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAV 286
L+ + +GSI++ V N + + + N LS ++ STL+ VV L +SNF
Sbjct: 616 LSYNYLSGSISDEVGNLVNLNKLIISY----NRLSGDIPSTLSQCVVLEYLEMQSNFFVG 671
Query: 287 NLKSGSTN 310
++ N
Sbjct: 672 SIPQTFVN 679
>06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171
Length = 916
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 107 LTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAV 286
L+ + +GSI++ V N + + + N LS ++ STL+ VV L +SNF
Sbjct: 396 LSYNYLSGSISDEVGNLVSLNKLIISY----NRLSGDIPSTLSQCVVLEYLEMQSNFFVG 451
Query: 287 NLKSGSTN 310
++ N
Sbjct: 452 SIPQTFVN 459
>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
Length = 757
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 197 DNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYTHFAQI 331
+N LS E+ S L ++ L+ NFL N+ +G N TH +
Sbjct: 582 NNSLSGEIPSELTNLRGIQSLNISRNFLQGNIPNGIGNLTHLESL 626
>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/94 (26%), Positives = 43/94 (45%)
Frame = +2
Query: 125 NGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGS 304
NG I E + KQ ++ + N+LS E+ S++ D+ ++ N L+ + G+
Sbjct: 1015 NGEIPETIGQLKQLESLDL----SHNELSGEIPSSMQDLNALGTMNLSYNNLSGRIPRGN 1070
Query: 305 TNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAG 406
T ++ A Y + IG G PL C+G
Sbjct: 1071 TMGSYDASSY-------IGNIGLCGPPLTRNCSG 1097
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 150 IYRNRGIQFSWFSYKVTMTCPTKCHRRLTMLWSDRNSQMNQTF 278
+Y GIQF K+ C +KCH+ M + R + + +
Sbjct: 13 VYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAY 55
>08_02_0070 -
11897089-11898150,11898389-11898644,11898755-11899059,
11899149-11899550
Length = 674
Score = 27.9 bits (59), Expect = 5.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 211 GQVIVTLYENHENCIPLFR 155
G+ IV ++NH++C+ +FR
Sbjct: 337 GKAIVKFFQNHQHCLAMFR 355
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 179 VVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKS 298
V F N LS E+ STL + + +S ++NFL+ ++ S
Sbjct: 545 VQFYADSNKLSGEIPSTLGECQLLQNISLQNNFLSGSVPS 584
>10_05_0074 - 8865884-8866567,8866612-8866923
Length = 331
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 372 GMVLLSKWSALVWTPTICPRGSIGY*RNIGXKIRXLXIIHMPSSK 506
G V LS W +++ T C G + R++G + I PS++
Sbjct: 190 GAVSLSAWFGTIYSRTACFAGLAHFVRSMGRGVEAAQIAPSPSAR 234
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +2
Query: 107 LTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAV 286
L+ ++G+I + + KQ ++ + + N+LS E+ +L+ + S L+ N L+
Sbjct: 962 LSSNQFSGTIHDQIGDLKQLESLDLSY----NELSGEIPPSLSALTSLSHLNLSYNNLSG 1017
Query: 287 NLKSGSTNYTHFAQIYQIVPVPSL 358
+ SGS QIY V P L
Sbjct: 1018 TIPSGSQLQALDDQIYIYVGNPGL 1041
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 122 YNGSIAEAVNLSKQRNTIFVVFI 190
Y GSI +A+ S++ N +FVV+I
Sbjct: 10 YKGSIPDAILQSRRDNKLFVVYI 32
>10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630
Length = 242
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 273 FDSFESFDLTTTSLSVDD 220
+D+F SFDL T SVDD
Sbjct: 209 WDTFSSFDLDTCEFSVDD 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,988
Number of Sequences: 37544
Number of extensions: 255821
Number of successful extensions: 627
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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