Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D12
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15) 30 1.1
SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0) 30 1.1
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 29 2.4
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 29 3.2
SB_45449| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1.4e-07) 28 5.6
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 28 5.6
SB_34497| Best HMM Match : NHL (HMM E-Value=0.039) 27 7.4
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 27 9.8
>SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)
Length = 875
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3
Query: 244 HNIVKRR*HFVGQVIVTLYENHENCIPLFR*IHGLRDATVVPTHGKLSISQNSVKFFN-L 68
+ ++K HFV ++ +N+ CIP++R L +AT++ + + + +NS + L
Sbjct: 627 NKVIKDGVHFVPKIYEGACDNNTCCIPMWRISFSLAEATLIRSLNE--VHKNSFRILKAL 684
Query: 67 INVLKD 50
IN K+
Sbjct: 685 INSAKE 690
>SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)
Length = 413
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -1
Query: 333 YICAKCV*LVDPL--FRLTARKFD--SFESFDLTTTSLSVDDISSDKSLSPCMKTTKIVF 166
Y +KCV L+D F+L + D S ES+ T SL+ ++ + SLS C KT +
Sbjct: 156 YRSSKCVSLMDTFYCFKLPEKLVDYRSKESYHRLTRSLAHENAAPFLSLSSCYKTQSELT 215
Query: 165 LC 160
C
Sbjct: 216 YC 217
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 182 VFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYT 316
+ +Q L DE+ T+ ++ + +++SN+L ++L + +YT
Sbjct: 1065 LLVQWSAPLPDEVGGTMQGFKLKYRKASDSNYLQISLGASQRSYT 1109
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 318 ISHKYIKSCRCRHYSSSAGMVLLSKWSALVWT 413
I+H YI S HYSS ++ S S+L+ T
Sbjct: 834 ITHHYIFSIFTHHYSSQPSLITTSSQSSLITT 865
>SB_45449| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1.4e-07)
Length = 305
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 286 QSEEWINQLYTFRTNISNRAGAVIILHRQEWYSSRSGL 399
++++ + L+ FR+ S+ G VI +H +W SG+
Sbjct: 57 KAKKAMESLWKFRSRASDLVGTVINIHNGDWVRRDSGV 94
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 323 AQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLS 427
A+I + V + +I N P + + G+D DNLS
Sbjct: 1334 AEIQETADVSNFRYIPSNQNPADTLTRGIDPDNLS 1368
>SB_34497| Best HMM Match : NHL (HMM E-Value=0.039)
Length = 177
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 365 IGRNGTPLEV-VCAGVDADNLSARIXRIL 448
+G G+P ++ V AG+D D LSA + ++
Sbjct: 113 VGNTGSPFDLQVTAGIDCDKLSAPVMSLI 141
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 3 HRQVNYFRXNQLGCD*SFKTLIKLKNLTEFCDIESLPCVGTTVASRRP 146
HR+ N N GCD +F TL KL+ +++ P RRP
Sbjct: 982 HRRTNSIACNYEGCDKAFPTLHKLRVHERKHELQDKPYKCECPYPRRP 1029
>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 927
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 386 LEVVCAGVDADNLSARIXRILAEHRQXNPXIXDHSH 493
L+++C D DN ++ I+AE + N H H
Sbjct: 476 LQIICDWTDYDNRMKKLVNIVAEQLEHNRLPSVHPH 511
>SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 287 NLKSGSTNYTHFAQIYQIVPVP 352
N++S Y HF YQ+VP P
Sbjct: 332 NMRSQLQAYIHFCSYYQLVPFP 353
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 258 SFDLTTTSLSVDDISSDKSLSPCMKTT 178
S D+ TS S D+ SLSPC +T
Sbjct: 75 SADIDNTSFSSADVDETPSLSPCSDST 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,036
Number of Sequences: 59808
Number of extensions: 308674
Number of successful extensions: 1009
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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