Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D12
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical pr...    56   2e-08
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    34   0.075
U40410-4|AAA81393.1|  259|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z49125-7|CAN99660.1|  717|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical ...    27   6.5  

>L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical
           protein ZK353.8 protein.
          Length = 469

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
 Frame = +2

Query: 113 MRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNL 292
           M+W+ G++A A+ +S++   + +V+I  D++           +   + L      + + L
Sbjct: 1   MQWFGGNVATAIQISRKNKALLIVYITTDSEDGQIFDGFWQHIDSSNLLCA---VVGIKL 57

Query: 293 KSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVV--CAGVDADNLSARIXRILAE 454
           K+G T+   FA IY    +P+ + I +NG PLEV+    G   D   A+  +  A+
Sbjct: 58  KAGETSAQQFADIYPTPILPAAYLIDQNGKPLEVITPLVGKTYDQFRAKFDKATAQ 113


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +2

Query: 194 GDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYTHFAQIYQ-IVPVPSLFFIG 370
           G+  ++D ++   N VV       +S  + +  +    +Y+   + Y  I P+  +  + 
Sbjct: 303 GETSIADSINYIDNGVVFVGSRLGDSQLIRLMTEPNGGSYSVILETYSNIGPIRDMVMVE 362

Query: 371 RNGTPLEVVCAGVDADNLSARIXR 442
            +G P  V C G D D  S R+ R
Sbjct: 363 SDGQPQLVTCTGADKDG-SLRVIR 385


>U40410-4|AAA81393.1|  259|Caenorhabditis elegans Hypothetical
           protein C54G7.1 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 386 EEYHSCR*RIMTAPARFDIFVRNVYSWLIHSSD*RPESLIHLRVSI*P 243
           +EYHSC  R    PA+ +I ++    W+I   D R ++    RV+I P
Sbjct: 75  DEYHSCLQRCPNVPAK-EILIKGQNVWMILCHDFRNDT--DFRVNIVP 119


>Z49125-7|CAN99660.1|  717|Caenorhabditis elegans Hypothetical
           protein C47G2.5b protein.
          Length = 717

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 166 PLFR*IHGLRDATVVPTHGKLSISQNSVKFFNLINVLK 53
           PL R I  L +   + TH K++++  S+ F NLI   K
Sbjct: 362 PLLRLIIELCNTNCMSTHEKIAVAFRSLPFINLIKAAK 399


>Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical
           protein C47G2.5a protein.
          Length = 776

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 166 PLFR*IHGLRDATVVPTHGKLSISQNSVKFFNLINVLK 53
           PL R I  L +   + TH K++++  S+ F NLI   K
Sbjct: 362 PLLRLIIELCNTNCMSTHEKIAVAFRSLPFINLIKAAK 399


>AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical
           protein Y45F10A.4 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 134 IAEAVNLS-KQRNTIFVVFIQGDNDLSDEMSSTL 232
           +A A++L+ KQR+ +  +FIQG  D +DE  + +
Sbjct: 122 LAVAIDLNEKQRDIVVPLFIQGFKDAADEAGTKI 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,505,322
Number of Sequences: 27780
Number of extensions: 232722
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)