Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D11
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   224   8e-60
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   224   8e-60
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    44   1e-05
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   6.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.0  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  224 bits (547), Expect = 8e-60
 Identities = 103/141 (73%), Positives = 118/141 (83%)
 Frame = +1

Query: 46  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 225
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+ K+GV AK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 226 QPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGVRF 405
           QPNSAIRKCVRVQLI NGKKVTAFVP DGCLN ++ENDE L +GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 406 KVVKVANVSLLALYKEKKERP 468
           KVVKVA V L AL+ EKKE+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  224 bits (547), Expect = 8e-60
 Identities = 103/141 (73%), Positives = 118/141 (83%)
 Frame = +1

Query: 46  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 225
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+ K+GV AK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 226 QPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGVRF 405
           QPNSAIRKCVRVQLI NGKKVTAFVP DGCLN ++ENDE L +GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 406 KVVKVANVSLLALYKEKKERP 468
           KVVKVA V L AL+ EKKE+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 30/82 (36%), Positives = 46/82 (56%)
 Frame = +1

Query: 172 GASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLX 351
           G+   +G+      V  K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+   L 
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 352 AGFGRKGHAVGDIPGVRFKVVK 417
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 109 WADKEFKKAHMGTKWKANPFGGASHAKGIV 198
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 115 PPIAVHDGGSRAYAP 71
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,060
Number of Sequences: 5004
Number of extensions: 45886
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)