Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D11
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 235 1e-62
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 231 3e-61
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 139 2e-33
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 48 7e-06
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 28 4.6
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.6
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 28 4.6
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 235 bits (576), Expect = 1e-62
Identities = 107/148 (72%), Positives = 122/148 (82%)
Frame = +1
Query: 31 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKV 210
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVL K+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 211 GVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDI 390
G+ AKQPNSAIRKC RVQL+ NGKK+ AFVP DGCLN IEENDE L AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 391 PGVRFKVVKVANVSLLALYKEKKERPXS 474
PGVRFKVVKV+ VSLLAL+KEKKE+P S
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 230 bits (562), Expect = 7e-61
Identities = 105/141 (74%), Positives = 118/141 (83%)
Frame = +1
Query: 46 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 225
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVL K+G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 226 QPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGVRF 405
QPNSAIRKC RVQL+ NGKK+ AFVP DGCLN IEENDE L AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 406 KVVKVANVSLLALYKEKKERP 468
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 231 bits (565), Expect = 3e-61
Identities = 106/143 (74%), Positives = 119/143 (83%)
Frame = +1
Query: 46 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 225
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVL K+G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 226 QPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGVRF 405
QPNSAIRKC RVQL+ NGKK+ AFVP DGCLN IEENDE L AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 406 KVVKVANVSLLALYKEKKERPXS 474
KVVKV+ VSLLAL+KEKKE+P S
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 139 bits (336), Expect = 2e-33
Identities = 62/96 (64%), Positives = 73/96 (76%)
Frame = +1
Query: 52 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAKQP 231
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVL K+G+ AKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 232 NSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEEND 339
NSAI KC RVQL+ NGKK+ AFVP DGCLN I+EN+
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENE 168
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +1
Query: 337 DEXLXAGFGRKGHAVGDIPGVRFKVVK 417
DE L +GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 148 KWKANPFGGASHAKGIVLXKVGVXAKQPNSAIRKC 252
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 105 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 203
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = -2
Query: 311 PSRGTNAVTFFPXLMSCTRTHLRMAELGCLAXTPTXSRTMPFA*DAPPKGLAF------H 150
P G N + L+ + A +G +A T + + T F GL H
Sbjct: 518 PFGGGNENPHYDKLVQMVEDNEFDAAIGDIAITMSRTVTTDFTQPFIESGLVILAPVKKH 577
Query: 149 FVPMWAFLNSLSAHRCSRRWFTCLRAVRI 63
V WAFL + C F C+ V++
Sbjct: 578 IVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,613
Number of Sequences: 37544
Number of extensions: 350352
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -