Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D11
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              207   6e-54
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              165   3e-41
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         34   0.096
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      32   0.29 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.8  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   8.3  
SB_12816| Best HMM Match : PDT (HMM E-Value=0.7)                       27   8.3  
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 27   8.3  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        27   8.3  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  207 bits (505), Expect = 6e-54
 Identities = 93/116 (80%), Positives = 104/116 (89%)
 Frame = +1

Query: 52  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAKQP 231
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVL KVGV AKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 232 NSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGV 399
           NSAIRKCVRVQLI NGKK+TAFVP DGCLN+IEENDE L +GFGR+GHAVGDIPG+
Sbjct: 62  NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  165 bits (400), Expect = 3e-41
 Identities = 77/88 (87%), Positives = 82/88 (93%)
 Frame = +1

Query: 211 GVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDI 390
           GV AKQPNSAIRKCVRVQLI NGKK+TAFVP DGCLN+IEENDE L +GFGR+GHAVGDI
Sbjct: 56  GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDI 115

Query: 391 PGVRFKVVKVANVSLLALYKEKKERPXS 474
           PGVRFKVVKVANVSLLAL+KEKKERP S
Sbjct: 116 PGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 187 KGIVLXKVGVXAKQPNSAIRKCVRVQLIXNGKKVTAFVP 303
           KG+ +       K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
 Frame = -2

Query: 269 MSCTRTHLRMAELGCLAXTPTXSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 105
           M C   +    E+ C    PT  R     T     DA P GL  H   M   L+  +  R
Sbjct: 58  MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116

Query: 104 CSRRWFTCLRAVRIPRGLP 48
           C   W T L+   +P GLP
Sbjct: 117 CPANWTTQLQRDALPTGLP 135



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 236 ELGCLAXTPTXSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 72
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197

Query: 71  VRIPRGLP 48
             +P GLP
Sbjct: 198 DTLPTGLP 205



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 236 ELGCLAXTPTXSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 72
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162

Query: 71  VRIPRGLP 48
             +P GLP
Sbjct: 163 DALPTGLP 170


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 132 SPHGYEMEG*PFRWCISRKGHRPRXSWCXS*AA 230
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 200  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 105
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 92  TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 184
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_12816| Best HMM Match : PDT (HMM E-Value=0.7)
          Length = 366

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 237 RVGLLSXYTNFXEDDALCVRCTTERVSLPFRTHVGFLEFFVRP 109
           R  L+S YTNF E  A  +  +T+    P R     +++ VRP
Sbjct: 73  RTLLMSGYTNFSESRAPAMYGSTKTTHRPSRQVDTLVDYAVRP 115


>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 256

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 124 ILCPPIAVHDGGSRAYAPFV 65
           ++ PP  + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -1

Query: 312 TVTGDECGHFLSVXNELYTDAFADGRVGLLSXYTNFXED 196
           T   D+   F    NE      AD R GL+    NF ED
Sbjct: 159 TTDPDKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,842,606
Number of Sequences: 59808
Number of extensions: 403405
Number of successful extensions: 751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)