Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D11
(576 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 253 3e-67
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 253 3e-67
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 253 3e-67
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 113 6e-25
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 50 6e-06
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 50 6e-06
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 50 6e-06
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 50 6e-06
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 50 6e-06
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 50 6e-06
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 253 bits (620), Expect = 3e-67
Identities = 120/143 (83%), Positives = 128/143 (89%)
Frame = +1
Query: 46 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 225
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 226 QPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGVRF 405
QPNSAIRKCVRVQLI NGKK+TAFVP DGCLN IEENDE L AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 406 KVVKVANVSLLALYKEKKERPXS 474
KVVKVANVSLLALYK KKERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 253 bits (620), Expect = 3e-67
Identities = 120/143 (83%), Positives = 128/143 (89%)
Frame = +1
Query: 46 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 225
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 226 QPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGVRF 405
QPNSAIRKCVRVQLI NGKK+TAFVP DGCLN IEENDE L AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 406 KVVKVANVSLLALYKEKKERPXS 474
KVVKVANVSLLALYK KKERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 253 bits (620), Expect = 3e-67
Identities = 120/143 (83%), Positives = 128/143 (89%)
Frame = +1
Query: 46 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 225
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 226 QPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGVRF 405
QPNSAIRKCVRVQLI NGKK+TAFVP DGCLN IEENDE L AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 406 KVVKVANVSLLALYKEKKERPXS 474
KVVKVANVSLLALYK KKERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 113 bits (271), Expect = 6e-25
Identities = 53/58 (91%), Positives = 53/58 (91%)
Frame = +1
Query: 295 FVPRDGCLNHIEENDEXLXAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 468
FVP DGCLN IEENDE L AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERP
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 58
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 50.0 bits (114), Expect = 6e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +1
Query: 154 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEE 333
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 334 NDEXLXAGFGRKGHAVGDIPGVRFKVVK 417
+ L G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 50.0 bits (114), Expect = 6e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +1
Query: 154 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEE 333
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 334 NDEXLXAGFGRKGHAVGDIPGVRFKVVK 417
+ L G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 50.0 bits (114), Expect = 6e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +1
Query: 154 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEE 333
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 334 NDEXLXAGFGRKGHAVGDIPGVRFKVVK 417
+ L G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 50.0 bits (114), Expect = 6e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +1
Query: 154 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEE 333
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 334 NDEXLXAGFGRKGHAVGDIPGVRFKVVK 417
+ L G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 50.0 bits (114), Expect = 6e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +1
Query: 154 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEE 333
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 334 NDEXLXAGFGRKGHAVGDIPGVRFKVVK 417
+ L G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 50.0 bits (114), Expect = 6e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +1
Query: 154 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIXNGKKVTAFVPRDGCLNHIEE 333
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 334 NDEXLXAGFGRKGHAVGDIPGVRFKVVK 417
+ L G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,649,754
Number of Sequences: 237096
Number of extensions: 1831766
Number of successful extensions: 5634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5634
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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