Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D09
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    29   0.59 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   1.8  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   9.5  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   9.5  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 159 PLNRRHKLPKQQKRREPQK*HRHLEISP*FAPRLLLAPGLFIRQFLX*YR 308
           P+N  +  P + KRR+P +  R+  ++P   PR +  P  F+++    Y+
Sbjct: 36  PINVINHSPSETKRRDPVEELRYKPLTPPQDPRKVAPPNSFLKKISLIYQ 85


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 12  LAAVRILLSSTSNQLILIXNHEAEYITDSGG 104
           +AA+R L ++ +NQ  L  NHE E ++ SGG
Sbjct: 148 IAALRNL-NTQNNQSTLASNHEDENVSSSGG 177


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 187 FGSLCRRLSGICYLEPVPWEHWQP 116
           F  L  R + + YL+ V  +HWQP
Sbjct: 315 FNGLWARKNDLPYLKAVHGKHWQP 338


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +2

Query: 320 NRFCICSAD-TTCAITEDDTEVHAYIHRCT 406
           N FC CS D T C    D    H  + R T
Sbjct: 66  NYFCTCSEDATVCVYPIDSPTEHTLLARTT 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,555
Number of Sequences: 5004
Number of extensions: 38208
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)