Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D09
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 227 SGNKPIICAPTTPCAWTVYSPVSXMIQTNMTNRFCICSADTTCAITEDDTEVHAYI 394
           + N P + A  T  A   Y P+  + ++++    C CS   TC  T    +VH++I
Sbjct: 134 ASNLPFVTAYVTYLAAFFYFPLKFLYESDLK---CACSFIITCETTRIAMKVHSFI 186


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +2

Query: 233 NKPIICAPTTPCAWTVYSPVSXMI---QTNMTNRFCICSADTTCAITEDDTEVHA 388
           N+P+ C P  PC+    S     I    +N  N  C  S +T C  T    +V A
Sbjct: 33  NQPLTCTPQDPCSCFSVSARYGAICHYSSNYNNYLCCHSQNTQCG-TNSSPQVSA 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,723,715
Number of Sequences: 27780
Number of extensions: 235335
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)