Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D08
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   5.3  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   7.0  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.0  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   9.3  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   9.3  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 217 CWMWVSTACSRRFPV 173
           C++WVS AC R+F V
Sbjct: 710 CFLWVSGACVRQFGV 724


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 167 AATTLPGAQVFGESWQEFVGDRVFSLRFCQLTPAVY 60
           A  T PGA   G  W +FVG  +  + FCQ T +V+
Sbjct: 24  ALNTYPGAPFSGLLWVQFVGCVI--MGFCQ-TESVF 56


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 167 AATTLPGAQVFGESWQEFVGDRVFSLRFCQLTPAVY 60
           A  T PGA   G  W +FVG  +  + FCQ T +V+
Sbjct: 24  ALNTYPGAPFSGLLWVQFVGCVI--MGFCQ-TESVF 56


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 9   ELFTDRHITESSFRNTTINRRCQLTKSKRKYAITDKFL 122
           EL T+R +    FRN TI    ++     +    DKF+
Sbjct: 236 ELITNRFLNVPDFRNVTIECLTEIASLTSQPQYNDKFV 273


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 378 ASVIGLVGGLAFISTSHGC 322
           A VIG +G   +++ +HGC
Sbjct: 327 APVIGKIGSSIYVAAAHGC 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,577
Number of Sequences: 5004
Number of extensions: 46252
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)