Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D08
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    29   3.2  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   4.2  
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)                   28   7.4  
SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)                 27   9.8  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       27   9.8  

>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +3

Query: 12   LFTDRHITESSFRNTTINRRCQLTKSKRKYAITDKFLPRLAKNLCTRKGSRRANTGNRLE 191
            L  D H    S R  TINRR +L K           + + A+ +C R    +  T  RLE
Sbjct: 2359 LLDDEHTDSESSRIRTINRRSRLFKLHYINLNRRDMIEQRAEVICERWDGLKERTSTRLE 2418


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 44  FSKYNDKPQVSTDKIEEKIRDHRQILAKTR--QKPVH 148
           F K   KP +  D++ E++ DH  ++ +T   Q+P +
Sbjct: 628 FGKREPKPSIQLDRLIERLEDHEDLMQETSSVQRPAN 664


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 343 ECKTANKANYACKSFDVAAPMKKPASPTYXVVXQXEQXKDYG 468
           +C T     Y+C++ D   P  +  +PTY    Q  Q ++ G
Sbjct: 136 QCNTRGHTAYSCRARDSRIPNPRNQNPTYRPFFQRPQWQNNG 177


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 510 HALMLNMTSSRCSSSLLYHYQS*RHYIIISLFHVIVKSKSP 632
           H ++   +    SSS  YH+    H+  I+  H+I+ + SP
Sbjct: 209 HIIITAPSPPSTSSSQRYHHHPHHHHSAITTIHIIITAPSP 249



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 510 HALMLNMTSSRCSSSLLYHYQS*RHYIIISLFHVIVKSKSP 632
           H +    + +  SSS  YH+    H+  I+  H+I+ + SP
Sbjct: 47  HIITTVPSPTSTSSSQRYHHHPHHHHSAITTIHIIITAPSP 87


>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 343 ECKTANKANYACKSFDVAAPMKKPASPTYXVVXQXEQXKDYG 468
           +C T     Y+C++ D   P  +  +PTY    Q  Q ++ G
Sbjct: 437 QCNTRGHTAYSCRARDSRIPNPRNQNPTYRPSFQRPQWQNNG 478


>SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)
          Length = 533

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 210 CG*VPRVLGGSQYWRGDYPSWCT 142
           CG V  +  G  YWRG  P  CT
Sbjct: 328 CGPVKTIKEGMMYWRGIVPENCT 350


>SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)
          Length = 222

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 343 ECKTANKANYACKSFDVAAPMKKPASPTYXVVXQXEQXKDYG 468
           +C T     Y+C++ D   P  +  +P Y    Q  Q ++ G
Sbjct: 172 QCNTRGHTAYSCRARDSRIPKPRNQNPNYRTSLQRPQWQNNG 213


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 343 ECKTANKANYACKSFDVAAPMKKPASPTYXVVXQ 444
           +C+  NKA  A +SFD+   + +P   T  +  +
Sbjct: 702 KCEATNKAGTAFRSFDIKVKVAEPQGETPTITTE 735


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,568,283
Number of Sequences: 59808
Number of extensions: 391474
Number of successful extensions: 1020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)