Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D08
         (641 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   4.7  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   4.7  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   6.2  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 151  LVHRFLASLGKNLSVIAYFLFDFVS*HLRFIVVFRK 44
            L H+F  +LG N + +  +  D    H  F   FR+
Sbjct: 2397 LYHKFATALGHNSADVQSYKIDANGNHQHFYTGFRR 2432


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 151  LVHRFLASLGKNLSVIAYFLFDFVS*HLRFIVVFRK 44
            L H+F  +LG N + +  +  D    H  F   FR+
Sbjct: 2398 LYHKFATALGHNSADVQSYKIDANGNHQHFYTGFRR 2433


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 532 HRAGVHHH 555
           HRAG+HHH
Sbjct: 495 HRAGLHHH 502


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,928
Number of Sequences: 2352
Number of extensions: 12176
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)