Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D08
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   1.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.5  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   3.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.7  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 116 FVGDRVFSLRFCQLTPAVYRCISKTRLRDVSV 21
           F G  V +  FC ++P++    + TRL  ++V
Sbjct: 48  FCGPNVINPFFCDMSPSLSLLCADTRLNKLAV 79


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 116 FVGDRVFSLRFCQLTPAVYRCISKTRLRDVSV 21
           F G  V +  FC ++P +    + TRL  ++V
Sbjct: 47  FCGPNVINPFFCDMSPLLSLVCADTRLNKLAV 78


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 548 IIIALSLSIVTSLYYNFFIPCXCQ 619
           I + LS+ ++TS +    +PC C+
Sbjct: 8   IYLFLSVILITSYFVTPVMPCNCK 31


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 82  QNRRENTRSPTNSCQDSPKTCAPGRVVA 165
           +N  E  RSP         TC  GR  A
Sbjct: 329 RNDSERNRSPVRPATVQYDTCCQGRATA 356


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 248 PHPHRPSAFH 277
           PH H PS +H
Sbjct: 318 PHQHHPSQYH 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,810
Number of Sequences: 438
Number of extensions: 3246
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)