Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D07
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 210 2e-55
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 110 2e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 107 1e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 4e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 62 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 7e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 6e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.13
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 26 3.6
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 210 bits (512), Expect = 2e-55
Identities = 96/113 (84%), Positives = 100/113 (88%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P +MVGMG KDSYV DEAQSK GILTLKYPIEHGIV NWDDM KIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHP LLTEAPLNPK+NR+KMTQI+F TFN PA YVAIQAVLSLYASGRTTG
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTG 150
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = +2
Query: 131 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSHRGK 232
++ LV+DNGSGMCKAGFAGDDAPRAVFPS G+
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR 37
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3
Query: 213 FPRIVGRPRHQG 248
FP IVGRPRH G
Sbjct: 31 FPSIVGRPRHHG 42
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 110 bits (264), Expect = 2e-25
Identities = 47/101 (46%), Positives = 73/101 (72%)
Frame = +1
Query: 271 KDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAP 450
KD V DEA++ +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 451 LNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
+NP ANR+KM + MF + +YVAIQAVLSLYA G ++G
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSG 150
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGK 232
+V+DNG+G K G+A D+ PR FPS G+
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 107 bits (257), Expect = 1e-24
Identities = 50/109 (45%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 VMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNE-LRVAPEEH 426
VM KD +V EAQ+ G+L ++ PIE GI+ NW DM +IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 427 PVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
P+LLTE PL N++K+ + + T N PA+ ++Q VL+LYAS RTTG
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTG 155
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGK 232
+ +DNGSG KAGFAGDD P+ +FP+ G+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.1 bits (231), Expect = 2e-21
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Frame = +1
Query: 274 DSYVXDEAQSKXGI-LTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAP 450
D ++ ++A K +L YPI HG + NWD M + W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 451 LNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYAS 558
LNP NR+ +IMF +FN +Y+A+QAVL+L AS
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +2
Query: 122 ATXKLPRLVVDNGSGMCKAGFAGDDAPRAVFP---SHRGKAPPSGP 250
A+ +P +++DNG+G K G+AG+DAP VFP + R SGP
Sbjct: 2 ASFNVP-IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGP 46
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 69.3 bits (162), Expect = 4e-13
Identities = 32/85 (37%), Positives = 47/85 (55%)
Frame = +1
Query: 316 LTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRQKMTQIMF 495
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 496 XTFNTPAMYVAIQAVLSLYASGRTT 570
+ PA Y+A Q + +ASG+ T
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGT 147
Score = 34.7 bits (76), Expect = 0.010
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGK 232
+V+D GS + GF+G+D P+ V PS+ G+
Sbjct: 14 IVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.5 bits (145), Expect = 4e-11
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGI--LTLKYPIEHGIVTNWDDMXKIWHHTFYNELR 408
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 409 VAPEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTT 570
V P E+ +++TE NP++ RQ++ + F + PA Y+ QAV +A+ ++T
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKST 150
Score = 35.9 bits (79), Expect = 0.004
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 131 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSHRG 229
++P LV+D GS + G+AG+++P + PS+ G
Sbjct: 9 EIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 7e-10
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +1
Query: 331 PIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRQKMTQIMFXTFNT 510
P E +++NWD M ++ +TF +L + EHP+ +TE NP R MT+++F +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 511 PAMYVAIQAVLSLY 552
P++ I + S Y
Sbjct: 145 PSVAYGIDGLFSFY 158
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVF 214
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 38.7 bits (86), Expect = 6e-04
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +1
Query: 331 PIEHGIVTNWDDMXKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANRQKMTQIMFX 498
PI+ G V +W+ + W H Y+ L P + +PV L +R+ TQ F
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 499 TFNTPAMYVAIQAVLSLYASG 561
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.1 bits (67), Expect = 0.13
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +1
Query: 391 FYNELRVAPEEHPVLLTE--APLNPKANRQKMTQIMFXTFNTPAM---YVAIQ 534
+Y L E+HP+LLT+ A L P+ + ++ +I + NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 3.6
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 341 CSMGYLR-VRIPXLLCASSXT*ESXCPIPTITALMAGPSHDARETLREEHHLLR 183
CS+ L+ V I L AS E CP MA +D E L+ E ++LR
Sbjct: 273 CSLNKLQLVGIAALFIASKYE-EVMCPSVQNFVYMADGGYDEEEILQAERYILR 325
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 592 PGVQHDTRWYDRTRTARARLGW 527
PG+ DTR+ RTR +++ W
Sbjct: 177 PGISLDTRFESRTRKEISKIEW 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,211
Number of Sequences: 5004
Number of extensions: 41363
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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