Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D07
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 221 2e-58
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 221 2e-58
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 221 2e-58
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 221 2e-58
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 221 2e-58
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 221 2e-58
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 221 2e-58
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 221 2e-58
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 221 2e-58
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 218 2e-57
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 217 4e-57
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 140 9e-34
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 109 1e-24
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 102 2e-22
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 87 9e-18
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 87 9e-18
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 87 9e-18
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 84 8e-17
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 77 7e-15
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 35 0.038
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 35 0.038
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 7.6
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
L++DNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 25 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 84
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 85 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 137
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 173 KAGFAGDDAPRAVFPSHRGKAPPSG 247
+AGFAGDDAPRAVFPS G+ G
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQG 29
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 221 bits (541), Expect = 2e-58
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 218 bits (533), Expect = 2e-57
Identities = 101/107 (94%), Positives = 102/107 (95%)
Frame = +1
Query: 253 MVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPV 432
MVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 433 LLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
LLTEAPLNPKANR+KMTQIMF TFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 107
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 217 bits (531), Expect = 4e-57
Identities = 100/113 (88%), Positives = 104/113 (92%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVA 414
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KIWHHTFYNELR+A
Sbjct: 38 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIA 97
Query: 415 PEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLTEAPLNPK+NR+KMTQIMF TFNTPAMYV IQAVLSLYASGRTTG
Sbjct: 98 PEEHPVLLTEAPLNPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTG 150
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = +2
Query: 131 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
++ LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 4 EIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 140 bits (338), Expect = 9e-34
Identities = 61/114 (53%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTF-YNELRV 411
P VM G D ++ +A+S G+ +++YP+EHGIV NW DM KIW + F ++L++
Sbjct: 41 PKYHRVMAGGLDGDIFIGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKI 100
Query: 412 APEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
PEEHPVLLT+APLNP NR++ +I F TFN PA+Y+ +QAVLSLYA+GRTTG
Sbjct: 101 FPEEHPVLLTDAPLNPLKNRERSAEIFFETFNVPALYIQMQAVLSLYATGRTTG 154
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGK 232
+V+DNGSG+ KAGFAG+ P+ F + G+
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGR 40
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 109 bits (263), Expect = 1e-24
Identities = 55/116 (47%), Positives = 76/116 (65%), Gaps = 3/116 (2%)
Frame = +1
Query: 235 PAIRAVM-VG-MGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNE-L 405
P +R+ VG + KD V +E +L + YP+++GIV NWDDM +W HTF E L
Sbjct: 39 PIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKL 98
Query: 406 RVAPEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYASGRTTG 573
+ P+E +LLTE PLNP +NR+KM Q+MF + ++YVA+QAVL+LYA G TG
Sbjct: 99 DIDPKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTG 154
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGK 232
+VVDNG+G K G+AG + P +FPS G+
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGR 38
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 102 bits (244), Expect = 2e-22
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = +1
Query: 250 VMVGMGXKDSYVXDEAQSKXGI-LTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEH 426
V G+ D ++ DEA S T+KYPI HGIV +WD M + W + LR PE+H
Sbjct: 56 VGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDH 115
Query: 427 PVLLTEAPLNPKANRQKMTQIMFXTFNTPAMYVAIQAVLSLYAS 558
LLTE PLN NR+ +IMF +FN P +Y+A+QAVL+L AS
Sbjct: 116 FFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTAS 159
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 131 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPS 220
+LP V+DNG+G K G+AG+ P+ + PS
Sbjct: 5 QLPACVIDNGTGYTKLGYAGNTEPQFIIPS 34
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 87.0 bits (206), Expect = 9e-18
Identities = 40/48 (83%), Positives = 41/48 (85%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKI 378
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KI
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 87.0 bits (206), Expect = 9e-18
Identities = 40/48 (83%), Positives = 41/48 (85%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKI 378
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KI
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 87.0 bits (206), Expect = 9e-18
Identities = 40/48 (83%), Positives = 41/48 (85%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDMXKI 378
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM KI
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 83.8 bits (198), Expect = 8e-17
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1
Query: 235 PAIRAVMVGMGXKDSYVXDEAQSKXGILTLKYPIEHGIVTNWDDM 369
P + VMVGMG KDSYV DEAQSK GILTLKYPIEHGIVTNWDDM
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSHRGKAPPSG 247
LVVDNGSGMCKAGFAGDDAPRAVFPS G+ G
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 77.4 bits (182), Expect = 7e-15
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = +1
Query: 334 IEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRQKMTQIMFXTFNTP 513
++ G++ +W+ KI H++ N L P EHPVL +E+ N +A R+K+T+IMF F P
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVP 153
Query: 514 AMYVAIQAVLSLYASGRTTG 573
A Y++ VLS +A GRT G
Sbjct: 154 AYYLSKNVVLSCFAQGRTHG 173
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 143 LVVDNGSGMCKAGFAGDDAPRAVFPSH 223
LV D GS + GFAG++ P+ PS+
Sbjct: 14 LVFDAGSQSFRVGFAGEEYPKGDIPSY 40
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 35.1 bits (77), Expect = 0.038
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 289 DEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 468
+E K + ++ PIE G V NWD +IW TF + V + LT+ A
Sbjct: 49 EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPAL 106
Query: 469 RQKMTQIMFXTF 504
++I+F F
Sbjct: 107 PDVSSEILFDYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 35.1 bits (77), Expect = 0.038
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 289 DEAQSKXGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 468
+E K + ++ PIE G V NWD +IW TF + V + LT+ A
Sbjct: 49 EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPAL 106
Query: 469 RQKMTQIMFXTF 504
++I+F F
Sbjct: 107 PDVSSEILFDYF 118
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 414 PRGTPRPAY*GSP---QPQGQQTEDDPDHVXNIQHARHVRXHPS 536
P+ T P +P QP QT P+ NI+ A HV PS
Sbjct: 1814 PQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIEEAEHVDAKPS 1857
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,394
Number of Sequences: 27780
Number of extensions: 267602
Number of successful extensions: 891
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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