Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D06
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5208| Best HMM Match : adh_short (HMM E-Value=1.1e-05) 69 2e-12
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 61 7e-10
SB_13156| Best HMM Match : adh_short (HMM E-Value=0.00022) 60 1e-09
SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34) 58 4e-09
SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23) 51 5e-07
SB_9273| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_15626| Best HMM Match : adh_short (HMM E-Value=3.8e-05) 47 1e-05
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_24642| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_24643| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_892| Best HMM Match : E2F_TDP (HMM E-Value=9.6) 40 0.002
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32) 38 0.005
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_12716| Best HMM Match : E3_binding (HMM E-Value=9.7) 32 0.35
SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11) 32 0.35
SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10) 32 0.35
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14) 31 0.61
SB_34916| Best HMM Match : adh_short (HMM E-Value=4.8e-06) 31 0.61
SB_27290| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 31 0.81
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_20860| Best HMM Match : HTH_10 (HMM E-Value=4.1) 30 1.4
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 30 1.4
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10) 30 1.4
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08) 29 3.3
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 29 3.3
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17) 27 7.6
SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_5208| Best HMM Match : adh_short (HMM E-Value=1.1e-05)
Length = 233
Score = 69.3 bits (162), Expect = 2e-12
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMH--KGIETEAAKALEKLCAHTFPLDVTRVESVQEF 218
G SG+G A L + GF +A KG ++ E++ T+ +DV+ SV+
Sbjct: 48 GSSSGMGRETAIALDKLGFHVLATCRTRKGEDSLRLDCSERM--RTYVMDVSDTVSVRSV 105
Query: 219 RKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPE 398
+ +L +L ++ + +VNNAG++ VG +W + I+ VNL G + V FLP
Sbjct: 106 YQQILQLL-ESEQQGLWGLVNNAGILQVGPLDWQSLDSIKQTADVNLWGLIDVTKTFLPL 164
Query: 399 IRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSA 506
++K K R++N+GS CG + + F +++
Sbjct: 165 LKKA--------KGRVVNMGSSCGAEEMLRFDTFAS 192
>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 65.3 bits (152), Expect = 3e-11
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAH---TFPLDVTRVESVQE 215
GCD+G G A RL + GF + + K+L++ C+ F +DVT+ E ++
Sbjct: 40 GCDTGFGRDTAIRLNQMGFNVFGAC---LTDKGMKSLKEACSGRLVAFLMDVTKHEQIEA 96
Query: 216 FRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLP 395
V + L P A+ NNAG M +G EW T + +NL G + V FLP
Sbjct: 97 AYAKVKSCLP--PDTGLWALDNNAGYMGLGPLEWFTMDDYKMQADINLWGLIDVTKTFLP 154
Query: 396 EIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
I+ K R++N S G+ AAYS +K G+ + + L
Sbjct: 155 LIKVA--------KGRVVNFSSIAGVATPALRAAYSVTKYGVESFSDAL 195
>SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 62.9 bits (146), Expect = 2e-10
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREG------FITIAGMHK-GIETEAAKALEKLCAHTFPLDVTRVE 203
GC +G+G A A LA++ + T+ + K GI EAA+ LDVT E
Sbjct: 203 GCSTGIGLAAALLLAKDDGRRFKVYATMRNLEKRGILEEAARRQLGDTLIVKQLDVTSDE 262
Query: 204 SVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVIS 383
SV E + + + + + +VNNAGV +G E T S++ +VN G +R+
Sbjct: 263 SVTEVLQSIYSAER-----RIDVLVNNAGVGLIGVLETHTMSLVREMFNVNFFGVVRLTK 317
Query: 384 AFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
A +P+++ P IIN+ S G++ +P A Y +SK + + L
Sbjct: 318 AVIPKMK-------GNPSGHIINIPSIGGIRGVPFNAIYCSSKFAVEGMAESL 363
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 60.9 bits (141), Expect = 7e-10
Identities = 33/91 (36%), Positives = 51/91 (56%)
Frame = +3
Query: 270 AVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRII 449
A+VNNAG+ + G ++W+T ++ VN+ G + V AFLP ++K+ RI+
Sbjct: 627 AIVNNAGIGSGGPFDWITVQQMQRVFDVNVWGLLNVTKAFLPLLKKSC--------GRIV 678
Query: 450 NVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
NV S G P P +AYSASK + + + L
Sbjct: 679 NVASCAGKLPGPGLSAYSASKYAVQSFSDAL 709
>SB_13156| Best HMM Match : adh_short (HMM E-Value=0.00022)
Length = 233
Score = 60.1 bits (139), Expect = 1e-09
Identities = 35/94 (37%), Positives = 50/94 (53%)
Frame = +3
Query: 240 LKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIE 419
L+ NP + +VNNAGV G EWMT + VNL G +R+ AFLP ++
Sbjct: 31 LRTNPDCLW-GLVNNAGVFIPGPVEWMTVEEYKQIAEVNLWGTVRMTKAFLPLLK----- 84
Query: 420 TTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGL 521
+ K R++N+ S G+ PL +AY SK G+
Sbjct: 85 ---REKGRVVNISSVAGMVPLQRSSAYCISKFGV 115
>SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 58.8 bits (136), Expect = 3e-09
Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 3/169 (1%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHT---FPLDVTRVESVQE 215
GCDSG G + RL GF + + LE+ C+ +DVT E + E
Sbjct: 393 GCDSGFGRDLVIRLDGMGFHVFGAC---LTQPGKRDLEQTCSKRTVGLLMDVTSHEQIIE 449
Query: 216 FRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLP 395
+ V VL AV NNAG MT+ EW + VNL G + V FLP
Sbjct: 450 AFEQVKRVLPSGTG--LWAVYNNAGYMTLAPLEWFPLDDYKRMADVNLWGLVDVSKTFLP 507
Query: 396 EIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
++ + R++NV S GL A YS +K G+ A + L
Sbjct: 508 LVKMA--------RGRVVNVASTVGLIANELTAPYSITKYGVEAFSDVL 548
Score = 34.3 bits (75), Expect = 0.066
Identities = 25/83 (30%), Positives = 36/83 (43%)
Frame = +3
Query: 294 MTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVGSHCGL 473
MT+ EW + VNL G + V FLP ++ + R++NV S GL
Sbjct: 1 MTLAPLEWFPLDDYKRMADVNLWGLVDVTKTFLPLVKMA--------RGRVVNVSSIVGL 52
Query: 474 QPLPAFAAYSASKAGLWALTRCL 542
A YS +K G+ A + L
Sbjct: 53 IANELTAPYSITKYGVEAFSDVL 75
>SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34)
Length = 527
Score = 58.4 bits (135), Expect = 4e-09
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 8/174 (4%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREG------FITIAGMHK--GIETEAAKALEKLCAHTFPLDVTRV 200
GC SG+G A A+ LA++G + T+ + K +E+ AL LDV+
Sbjct: 10 GCSSGIGLATASILAKDGEKRFRVYATMRNLDKKGSLESACQNALGDTL-FIRELDVSSD 68
Query: 201 ESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVI 380
+SV+E L + + + + +VNNAG+ +G E T S+++ + N G +R+
Sbjct: 69 DSVEE----ALNAIYEE-EGRIDILVNNAGISHIGMLETQTQSLVKETFNTNFFGVLRMS 123
Query: 381 SAFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
A +P ++ S IIN+ S G +P Y ASK + L+ L
Sbjct: 124 KAVIPRMK-------SDHSGHIINISSTAGHTGMPFTGLYCASKFAVEGLSESL 170
>SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 54.0 bits (124), Expect = 8e-08
Identities = 32/91 (35%), Positives = 46/91 (50%)
Frame = +3
Query: 270 AVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRII 449
AV NNAG MT+ EW + VNL G + V FLP ++ + R++
Sbjct: 23 AVYNNAGFMTLAPLEWFPLDDYKRMADVNLWGLVDVTKTFLPLVKMA--------RGRVV 74
Query: 450 NVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
NV S G+ +P+ AAYS +K G+ A + L
Sbjct: 75 NVSSIAGIVVVPSMAAYSITKYGVEAFSDAL 105
>SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23)
Length = 228
Score = 51.2 bits (117), Expect = 5e-07
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHTFPLDVTRVESVQE--F 218
G +GLG A+ + +G T+ G + + A+ EK C P V+ +
Sbjct: 9 GVSTGLGLALTKWFSSQGH-TVVGCGRSA-AKIAEMNEKYCGKGKPNQFYVVDITDDSVV 66
Query: 219 RKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEW-MTASMIESPVHVNLLGAMRVISAFLP 395
+++ V K F V+NNAG + W +TA + V VNL G+ VI +FLP
Sbjct: 67 KEWATNVCKSFGPPDF--VLNNAGFVNQNAPLWEITAEEFDKVVDVNLKGSANVIRSFLP 124
Query: 396 EIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
++ K K I+N S G A Y A+K G+ LTR L
Sbjct: 125 KMIKAG-------KGVIVNFSSGYGKAGKAKMAPYCATKWGIEGLTRAL 166
>SB_9273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/87 (34%), Positives = 43/87 (49%)
Frame = +3
Query: 273 VVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIIN 452
VVNNAG+ VG +W+ + +NL G + V FLP +++ + RI+N
Sbjct: 20 VVNNAGIAGVGPVDWIPVERFKHVADINLWGLVDVTKTFLPLVKRA--------RGRIVN 71
Query: 453 VGSHCGLQPLPAFAAYSASKAGLWALT 533
V S G LP + YS SK G A +
Sbjct: 72 VTSIAGRFTLPFASPYSVSKYGAEAFS 98
>SB_15626| Best HMM Match : adh_short (HMM E-Value=3.8e-05)
Length = 426
Score = 46.8 bits (106), Expect = 1e-05
Identities = 50/169 (29%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGM--HKGIETEAAKALEKLCAHTFPLDVTRVESVQEF 218
GCDSG G A L G IA KG E + ++L A LDVT +VQ+
Sbjct: 41 GCDSGFGRVTAVHLDGLGVHVIACCLTEKGAENLRNECSDRLRA--LLLDVTSSVNVQDV 98
Query: 219 RKYVLTVLKDNPKYK-------------------FHAVVNNAGVMTVGKYEWMTASMIES 341
+ V ++ N Y +VNNAG + VG EW+ S +
Sbjct: 99 YETVKRIVPPNIGYADLEHRNRVFGNRICSIFAGLWGLVNNAGTLDVGPIEWLPLSSYKH 158
Query: 342 PVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPA 488
VNL G + V AFLP +++ R++NV S +P+ A
Sbjct: 159 VADVNLWGMIDVTKAFLPLVQQA--------HGRVVNVSSITVAKPVDA 199
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 43.2 bits (97), Expect = 1e-04
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 7/163 (4%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREG---FITIAGMH----KGIETEAAKALEKLCAHTFPLDVTRVE 203
GC SG+G A+A L+ + F A M K E + + + LDV E
Sbjct: 41 GCSSGIGLALAVLLSHDADKRFKVYATMRNLGKKDALLEKCSGVVEDLLNIKELDVCSDE 100
Query: 204 SVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVIS 383
SV K V+ + + + + +VNNAG+ E T I N+ G MR+ +
Sbjct: 101 SV----KAVVAEIVEK-EGRIDVLVNNAGIGLFCVPECATTDAINKVFEPNVYGLMRMTN 155
Query: 384 AFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASK 512
A +P ++K + ++N+GS G+ P Y ASK
Sbjct: 156 AVIPHMKK-------QRAGHVVNIGSVLGIVGTPFSEIYCASK 191
>SB_24642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 41.5 bits (93), Expect = 4e-04
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFIT--IAGMHKGIETEAAKALEKLCA-----HTFPLDVTRVE 203
GC+ GLG + R + + + E+A L+KL A H L+VT +
Sbjct: 12 GCNRGLGLEFVKQFLRSKNPPEHLIATCRSLTAESASELKKLAAENQNLHLLELEVTDFQ 71
Query: 204 SVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVIS 383
++Q + +++D H ++NNAG++ +T + N + ++++
Sbjct: 72 AIQRCAQQTREIVQDKG---LHILMNNAGIVDPAGLLDVTEEQMIRVFKANTVAPLQIVQ 128
Query: 384 AFLPEIR---KTAIETTSKPK 437
AFLP ++ KTA PK
Sbjct: 129 AFLPLLKQGGKTASFQDQAPK 149
>SB_24643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 40.7 bits (91), Expect = 8e-04
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFIT--IAGMHKGIETEAAKALEKLCA-----HTFPLDVTRVE 203
GC+ GLG + R + + + E+A L+KL A H L+VT +
Sbjct: 12 GCNRGLGLEFVKQFLRSKNPPEHLIATCRSLAGESASELKKLAAENQNLHLLELEVTDFQ 71
Query: 204 SVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVIS 383
++Q + ++++ H +VNNAG++ +T + N + ++++
Sbjct: 72 AIQRCAEQTREIVQEKG---LHILVNNAGILDPAGLLDVTEEQMIRVFKANTVAPLQIVQ 128
Query: 384 AFLPEIR---KTAIETTSKPK 437
AFLP ++ KTA PK
Sbjct: 129 AFLPLLKQGGKTASFQDQAPK 149
>SB_892| Best HMM Match : E2F_TDP (HMM E-Value=9.6)
Length = 104
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +3
Query: 273 VVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIIN 452
VVNNAG+ VG +W+ + +NL G + V FLP +++ + RI+N
Sbjct: 5 VVNNAGIAGVGPVDWIPVERFKHVADINLWGLVDVTKTFLPLVKRA--------RGRIVN 56
Query: 453 VGSHCG 470
V S G
Sbjct: 57 VTSIAG 62
>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
Length = 728
Score = 37.9 bits (84), Expect = 0.005
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 3/169 (1%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGF-ITIAGMHKGIETEAAKALEKLCA--HTFPLDVTRVESVQE 215
G SG+G A LA++G + + ++ A+ ++ L A H F DV + + V++
Sbjct: 42 GAASGIGRLTALILAKKGCKLVLWDINLEALKAVAQEIQDLGAETHYFECDVRKKDEVEK 101
Query: 216 FRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLP 395
V ++D ++NNAGV+T K+ + S + VN L + I F+P
Sbjct: 102 ----VANAVEDQAG-NVTILINNAGVVTGKKFLNCSESDVMRTFQVNSLAHIWTIQRFIP 156
Query: 396 EIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
+ + K + I+++ S G L Y ASK L L
Sbjct: 157 SMME-------KNRGHIVSIASVAGYFGLVGCVDYCASKFAAVGLIEAL 198
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 34.7 bits (76), Expect = 0.050
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +3
Query: 240 LKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIE 419
+ ++ K A+ NNAG EW S + VNL G + V FLP ++
Sbjct: 248 ISEHRKPGLWALANNAGYGACAPIEWYPLSHYKRMADVNLWGVVDVSKTFLPLVKMA--- 304
Query: 420 TTSKPKPRIINVGSHCGLQPLPAFAA-YSASKAGLWALT 533
+ R++N+ S G P F + Y+ +K G+ A +
Sbjct: 305 -----RGRVVNISSIYGFFS-PIFGSHYAITKYGVEAFS 337
>SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 32.3 bits (70), Expect = 0.27
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMH--KGIETEAAKALEKLCAHTFPLDVTRVESVQEF 218
G +SG+G A A LAR G I + E A++ K+ + S+
Sbjct: 75 GANSGIGKATALELARRGARVIMACRDLESAEKAASEIRYKVPKAEVVCRFLDLNSLISV 134
Query: 219 RKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPE 398
RK+ V+++ + + +VNNAGV + T E+ VN LG + + L
Sbjct: 135 RKFAEDVMRE--EKRLDILVNNAGVYQPANKK--TVDGFETQFGVNHLGHFLLTNMLLDL 190
Query: 399 IRKTA 413
++ +A
Sbjct: 191 LKASA 195
>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 351 VNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWAL 530
VN+ G ++ A P + KTA T P ++N+ S + P YS+SK + ++
Sbjct: 155 VNVQGYANMVQACHPYM-KTACNTG--PSGAVVNLASISAHRAQPVHWTYSSSKGAIISM 211
Query: 531 TRCL 542
T+C+
Sbjct: 212 TKCM 215
>SB_12716| Best HMM Match : E3_binding (HMM E-Value=9.7)
Length = 133
Score = 31.9 bits (69), Expect = 0.35
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 351 VNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWAL 530
VNL G + V FLP IRK R++N+ S G +P YS +K G+ A
Sbjct: 19 VNLWGLIDVTLTFLPLIRKCG--------GRVVNISSIAGRLSIPNTGPYSVTKYGVEAF 70
Query: 531 TRCL 542
+ L
Sbjct: 71 SDAL 74
>SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11)
Length = 305
Score = 31.9 bits (69), Expect = 0.35
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 9/167 (5%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGF-ITIAGMHKGIETEAAKALEKLCAHTFPLDVTRVESVQEFR 221
G SG+G +A A+ G I ++K + + ++ L F +R
Sbjct: 60 GAGSGIGKGMAIEFAKIGAKIVCVDINKQANDQTVEVIKSLNQKAFGYKCDCSSREDIYR 119
Query: 222 KYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEI 401
V ++K + +VNNAG+++ K+ MI+ + VN + ++ A P+
Sbjct: 120 --VADIVKREVG-EVTILVNNAGIVSGKKFLDTEDWMIQKTMEVNTMAHFWIL-ALNPDY 175
Query: 402 RKTAIETT--------SKPKPRIINVGSHCGLQPLPAFAAYSASKAG 518
++T +K ++N+ S G +P Y +SK G
Sbjct: 176 IVFTLQTVKSFLPSMLAKNHGHVVNIASSAGFFGVPGMCDYCSSKFG 222
>SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)
Length = 371
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 135 TEAAKALEKLCAHTFPLDVTRVESVQEFRKYVLTVLKDNPKYKFHAVV 278
TE A L A TFP+D V++ R+YV + +K P H++V
Sbjct: 5 TEWDFAESNLLAETFPIDPETRNYVRQVRRYVFSYVKPTPLRARHSLV 52
>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
Length = 337
Score = 31.1 bits (67), Expect = 0.61
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHT---FPLDVTRVESVQE 215
GCDSGLG +A RL GF + + + LE+ C+ +DVT E + E
Sbjct: 248 GCDSGLGRDLAIRLDGMGFHVFGAC---LTQQGKRDLEQTCSKRTVGLLMDVTSHEQIAE 304
Query: 216 FRKYVLTVL 242
+ V +VL
Sbjct: 305 AFEQVKSVL 313
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHT---FPLDVTRVESVQE 215
GCDSG G +A RL GF + + + LE+ C+ +DVT E + E
Sbjct: 166 GCDSGFGRDLAIRLDGMGFHVFGAC---LTQQGKQDLEQTCSKRTVGLLMDVTSHEQIAE 222
Query: 216 FRKYVLTVLKDNPKYKFH 269
+ V VL +H
Sbjct: 223 AFEQVKRVLPSGTVGDYH 240
>SB_34916| Best HMM Match : adh_short (HMM E-Value=4.8e-06)
Length = 251
Score = 31.1 bits (67), Expect = 0.61
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = +3
Query: 171 HTFPLDVTRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGV-MTVGKYEWMTASMIE--S 341
H F LDVT ES++E + ++L+ + ++NNAG+ + G + MIE
Sbjct: 60 HVFQLDVTSPESIREATEKATSILQGS---GLSLLINNAGLFVNKGLDDIEAEDMIEVFK 116
Query: 342 PVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGL 521
V L + + L + ++++ K I+N+ S L AS+A
Sbjct: 117 TQTVAPLMITKSLLGLLKQAARSSVPDLKTGKALIVNISSKTSLISDNHSGGMYASRASK 176
Query: 522 WAL 530
AL
Sbjct: 177 CAL 179
>SB_27290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 31.1 bits (67), Expect = 0.61
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHT---FPLDVTRVESVQE 215
GCDSGLG +A RL GF + + + LE+ C+ +DVT E + E
Sbjct: 55 GCDSGLGRDLAIRLDGMGFHVFGAC---LTQQGKRDLEQTCSKRTVGLLMDVTSHEQIAE 111
Query: 216 FRKYVLTVL 242
+ V +VL
Sbjct: 112 AFEQVKSVL 120
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 30.7 bits (66), Expect = 0.81
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 7/173 (4%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIA----GMHKGIETEAAKALEKLCAHTFPLD---VTRVE 203
G +GLG A A G + G KG E ++ +A +K+ V
Sbjct: 17 GAGNGLGRQYALAFAERGASVVVNDLGGDTKG-EGKSGRAADKVVQEIRAKGGKAVADYN 75
Query: 204 SVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVIS 383
SV++ + V T +K + VVNNAG++ M+ + V+L G+ V
Sbjct: 76 SVEQGDQVVETAIKAFGR--IDVVVNNAGILRDKSILRMSELDWDLVQRVHLKGSFLVTR 133
Query: 384 AFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
A P ++K RII S G+ A YSA+K GL L+ L
Sbjct: 134 AAWPHMKKQKFG-------RIIMTTSTSGIYGNFGQANYSAAKLGLVGLSNTL 179
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 275 GQQRWSYDSRKVRMDDSIDDRKPGSCEFARRD 370
G +R S R VR DD +DR+PG E RD
Sbjct: 647 GLERESRGERDVRRDDPREDRRPGMSEGRGRD 678
>SB_20860| Best HMM Match : HTH_10 (HMM E-Value=4.1)
Length = 110
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAH---TFPLDVTRVESVQ 212
GCD+G G A RL + GF + + K+L++ C+ F +DVT+ E ++
Sbjct: 40 GCDTGFGRDTAIRLDQMGFNVFGAC---LTDKGIKSLKEACSGRLVAFLMDVTKHEQIE 95
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 29.9 bits (64), Expect = 1.4
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Frame = +3
Query: 249 NPKY-KFHAVVNNAG----VMTVGKY-EWMTASMIESPVHVNLLGAMRVISAFLPEIRKT 410
N K+ +A VN AG V T+ K E + E + VN G+ VI ++ K
Sbjct: 86 NEKFGPLNAAVNCAGIGIAVKTLSKTGEAHALDLFEKVLKVNTTGSFNVIRLVAEQMIKN 145
Query: 411 AIETTSKPKPRIINVGSHCGLQPLPAFAAYSASKAGLWALT 533
T + I N S AAYSASK G+ +T
Sbjct: 146 E-PTEGGERGVITNTASVAAFDGQMGQAAYSASKGGIVGMT 185
>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
Length = 289
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/94 (28%), Positives = 40/94 (42%)
Frame = +3
Query: 261 KFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKP 440
+ +VNNAG MT + M V++ GA ++ K
Sbjct: 116 RIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQG------QGG 169
Query: 441 RIINVGSHCGLQPLPAFAAYSASKAGLWALTRCL 542
RIIN+ S PLP +AY+A+K L LT+ +
Sbjct: 170 RIINITSVHEHTPLPDASAYTAAKHALGGLTKAM 203
>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
Length = 319
Score = 28.7 bits (61), Expect = 3.3
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 3/142 (2%)
Frame = +3
Query: 45 GCDSGLGWAVAARLAREGFITIAG---MHKGIETEAAKALEKLCAHTFPLDVTRVESVQE 215
G +G+G A LA+ G I G + +G T + + ++ + S+
Sbjct: 44 GATTGIGKETAVDLAKRGARVIIGARNLDRG-NTAVRDIQSRSGSQQVFVEHLDLASLSS 102
Query: 216 FRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLP 395
RK+ + +N + + H ++NNAGV + T E VN L +I+ L
Sbjct: 103 VRKFAEVM--NNKEERIHILINNAGVGFIPFRR--TEDGFEMIFAVNHLSHFLLINLLLE 158
Query: 396 EIRKTAIETTSKPKPRIINVGS 461
+++++A RIINV S
Sbjct: 159 KLKRSA-------PSRIINVSS 173
>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
Length = 749
Score = 28.7 bits (61), Expect = 3.3
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 1/132 (0%)
Frame = +3
Query: 123 KGIETEAAKALEKLCAHTFPLDVTRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTV 302
+G + E+ A KLC H F ++ + V E R+ + K + V
Sbjct: 83 EGQQEESRSASCKLCKH-FSQNMEKQALVLEPRQ------QSKAKQSLSKGARQSTVNEK 135
Query: 303 GKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIETT-SKPKPRIINVGSHCGLQP 479
G + + P R S+ L +I ++TT S P + N P
Sbjct: 136 GSNQPGIKAETSKPKRAGTFRTRRTSSSSLTDIPSPPLQTTISSPVQNVPNNLGTSNQGP 195
Query: 480 LPAFAAYSASKA 515
LP+FA+ + SKA
Sbjct: 196 LPSFASITVSKA 207
>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 27.9 bits (59), Expect = 5.7
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = +3
Query: 45 GCDSGLGWAVAARLARE--GFITIAGMHKGIETEAAKALEKLCAHTF-PLDVTRVESVQE 215
G + G+G+ V +L ++ G I + A ++L + LDVT +S+ E
Sbjct: 30 GGNRGIGYCVVQQLVQQFDGNIILTARSDEQGEAACRSLNVGGRVEYHKLDVTSNDSIHE 89
Query: 216 FRKYVLTVLKDNPKYK-FHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFL 392
+V KY +VNNAG++ A E V N G + V ++
Sbjct: 90 LTLHV------QEKYGGLDILVNNAGILKKESSGTSYARKAEDCVKTNFFGMLDVYNSMY 143
Query: 393 PEIRKTA 413
P +++ A
Sbjct: 144 PLLKEQA 150
>SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)
Length = 288
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 321 TASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVG 458
T+S++ SP+ VNL + I+ P + TA + P+P +G
Sbjct: 26 TSSVVTSPLTVNLCRPLVTIATSCPPVTTTA--QAAAPRPNSAEIG 69
>SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -1
Query: 472 RPQWLPTLIIRGLGLL-VVSIA 410
+PQW+P LIIR L +L +V IA
Sbjct: 124 KPQWIPRLIIRRLWILALVEIA 145
>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = -3
Query: 380 NDSHRAEQIHMNRAFYHRCCHPFVLSYCHNSSVVDHGMKF------IFRIIFQDCKHVLP 219
++SHR + H +YH C F+ S CH +V F +FR + +LP
Sbjct: 100 SESHRYWKTH---EYYHACAMVFLFSVCHIMVLVHPTATFDLNYVRLFRALATARHQLLP 156
Query: 218 EFLNAFNS 195
+ N+
Sbjct: 157 QIAQCLNT 164
>SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 321 TASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVG 458
T+S++ SP+ VNL + I+ P + TA + P+P +G
Sbjct: 26 TSSVVTSPLTVNLCRPLVTIATSCPPVTTTA--QAAAPRPNSAEIG 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,669
Number of Sequences: 59808
Number of extensions: 351013
Number of successful extensions: 1008
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -