Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_D04
         (422 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        30   0.91 
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)                   29   1.2  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   2.8  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   4.8  
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)            27   4.8  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         27   8.5  
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)                     27   8.5  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -1

Query: 230 LRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFLTVLVXDT 51
           L  L+ C+ N   +F    + + AI  ++ + +SK+ V+ V     +  A FLT+L    
Sbjct: 568 LELLLSCLQNAGPVFCNHEMFITAIKQYLCVALSKNGVSSVPSVFELSLAIFLTLLSSFK 627

Query: 50  TH 45
           TH
Sbjct: 628 TH 629


>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 193 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 363
           I   + ++MR+ R +  R ++ +LQE   E++R+D    E++ L    I +D   KD L
Sbjct: 44  IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 387 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 283
           N+   ++ +H++  G    D M E++HF  W++V  P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 151 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 330
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+   +  EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514

Query: 331 I 333
           +
Sbjct: 515 M 515


>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
          Length = 163

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
 Frame = +1

Query: 175 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 345
           K LR ++  FA+H  RRLR + +R     K+ +     ++ Y P VS A+   II ++D 
Sbjct: 56  KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114

Query: 346 DTKDMLKMLD----FNNINGLQLTQPATQ 420
             +  + + D      ++N   + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 214 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 357
           L +R RHS+    S     + RE+  +++ ++  LE++    D DT++
Sbjct: 54  LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 301 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 396
           PE+S + H I    PD +D   +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140


>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
          Length = 275

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 239 KCEESLSNFRKRSVRGVTTMSQKCLL 316
           KC  SL  F+K  ++G T +S+K L+
Sbjct: 112 KCILSLGRFKKAKIKGQTFVSKKALV 137


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 125 ILIQIKEYVKKSLSFLPSLLGIKLLDL 205
           +L  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,576,125
Number of Sequences: 59808
Number of extensions: 199933
Number of successful extensions: 496
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)