Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_D03
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 163 7e-41
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical... 33 0.17
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 33 0.17
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 33 0.17
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 33 0.17
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 33 0.17
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 31 0.53
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81560-3|CAB04548.2| 328|Caenorhabditis elegans Hypothetical pr... 30 1.2
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 30 1.2
AF003386-6|AAK82897.1| 527|Caenorhabditis elegans Hypothetical ... 30 1.6
AF003386-5|AAK82898.1| 529|Caenorhabditis elegans Hypothetical ... 30 1.6
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 29 2.1
U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF003386-2|AAB54255.1| 527|Caenorhabditis elegans Hypothetical ... 29 2.1
AF003386-1|AAK82899.1| 529|Caenorhabditis elegans Hypothetical ... 29 2.1
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 29 2.8
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 29 3.8
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 29 3.8
AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical... 29 3.8
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 6.6
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 28 6.6
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 6.6
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 6.6
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 6.6
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 6.6
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 6.6
Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 163 bits (397), Expect = 7e-41
Identities = 74/156 (47%), Positives = 103/156 (66%)
Frame = +3
Query: 162 DEERIFIVRKMNDGDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSA 341
D++R R + DG+W C D C +N C K +P +K K+G E+GK
Sbjct: 6 DDDREQKRRALKDGEWACVDSKCAKVNEESLLVCDEYGKPKPR----AKSKIGKELGKEQ 61
Query: 342 AEKSRGLFNADDWQCNKCANVNWARRQTCNVCNAPKFGEVEARTGYGGGYNERGVVXYRR 521
AEKS+GLF A+DW C+KC NVNWARR+TCNVCNAPK ++E RTGYGGGYN+R V Y +
Sbjct: 62 AEKSKGLFAAEDWVCSKCGNVNWARRRTCNVCNAPKLADLERRTGYGGGYNDRQNVEYVK 121
Query: 522 REHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTED 629
R++ D+E+DEFG +K+K+K E Q ++ + ++D
Sbjct: 122 RDY--DEEFDEFG-RKKKKKGEDQFRDMEEGEASDD 154
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 372 DDWQCNKCANVNWARRQTCNVCNAPKFGEVEARTGYGGGYNERG 503
+DW C +C N N+A R+ CN C AP+ + +G GGG G
Sbjct: 398 NDWPCEQCGNSNFAFRRECNQCQAPR---PDGGSGGGGGERRGG 438
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 204 DWICSDPSCGNINFARRASCYRCNKDRPDG 293
DW C CGN NFA R C +C RPDG
Sbjct: 399 DWPCEQ--CGNSNFAFRRECNQCQAPRPDG 426
>AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical
protein T08B2.5g protein.
Length = 695
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 372 DDWQCNKCANVNWARRQTCNVCNAPKFGEVE 464
DDW C C+ N+ +RQTC C K +E
Sbjct: 88 DDWICAHCSMNNFVKRQTCFKCEISKDQSME 118
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 204 DWICSDPSCGNINFARRASCYRCNKDRPDGVKPSK 308
DWIC+ C NF +R +C++C + ++ K
Sbjct: 89 DWICAH--CSMNNFVKRQTCFKCEISKDQSMELEK 121
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 372 DDWQCNKCANVNWARRQTCNVCNAPKFGEVE 464
DDW C C+ N+ +RQTC C K +E
Sbjct: 231 DDWICAHCSMNNFVKRQTCFKCEISKDQSME 261
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 204 DWICSDPSCGNINFARRASCYRCNKDRPDGVKPSK 308
DWIC+ C NF +R +C++C + ++ K
Sbjct: 232 DWICAH--CSMNNFVKRQTCFKCEISKDQSMELEK 264
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 372 DDWQCNKCANVNWARRQTCNVCNAPKFGEVE 464
DDW C C+ N+ +RQTC C K +E
Sbjct: 259 DDWICAHCSMNNFVKRQTCFKCEISKDQSME 289
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 204 DWICSDPSCGNINFARRASCYRCNKDRPDGVKPSK 308
DWIC+ C NF +R +C++C + ++ K
Sbjct: 260 DWICAH--CSMNNFVKRQTCFKCEISKDQSMELEK 292
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 372 DDWQCNKCANVNWARRQTCNVCNAPKFGEVE 464
DDW C C+ N+ +RQTC C K +E
Sbjct: 317 DDWICAHCSMNNFVKRQTCFKCEISKDQSME 347
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 204 DWICSDPSCGNINFARRASCYRCNKDRPDGVKPSK 308
DWIC+ C NF +R +C++C + ++ K
Sbjct: 318 DWICAH--CSMNNFVKRQTCFKCEISKDQSMELEK 350
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 372 DDWQCNKCANVNWARRQTCNVCNAPKFGEVE 464
DDW C C+ N+ +RQTC C K +E
Sbjct: 318 DDWICAHCSMNNFVKRQTCFKCEISKDQSME 348
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 204 DWICSDPSCGNINFARRASCYRCNKDRPDGVKPSK 308
DWIC+ C NF +R +C++C + ++ K
Sbjct: 319 DWICAH--CSMNNFVKRQTCFKCEISKDQSMELEK 351
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 525 EHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTED 629
+ SS+DE +E KKR +KS+++ + QA +E+
Sbjct: 307 DSSSEDEEEEKSSKKRSKKSKKESDEEQQASDSEE 341
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 525 EHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTEDGAEQ 641
+ SDDE DE KK+KRKS+ +K+K + + G ++
Sbjct: 191 DEDSDDEDDEKA-KKKKRKSKGAEKSKPSTSKKDAGGKK 228
>Z81560-3|CAB04548.2| 328|Caenorhabditis elegans Hypothetical
protein K02E2.3 protein.
Length = 328
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 554 FVIFIIGRMLTTSVLYNSALIITAAVTGTSFNFTKFWCIAHITRLTPSPIHI 399
FV+ I + + S+L+ LI+T A F F FW + HIT ++ + H+
Sbjct: 185 FVLSIDDKAIIYSILFILVLILTQAFF---FVFRIFWYLFHITSVSKNTAHL 233
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 525 EHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTEDGAEQ 641
+ SDDE DE KK+KRKS+ +K+K + + G ++
Sbjct: 191 DEDSDDEDDEKA-KKKKRKSKGAEKSKPSTSKKDAGGKK 228
>AF003386-6|AAK82897.1| 527|Caenorhabditis elegans Hypothetical
protein F59E12.4a protein.
Length = 527
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 378 WQCNKCANVNWARRQTCNVCNAP 446
W C C N A RQ C++C P
Sbjct: 502 WNCGHCTFQNEAARQDCSMCGLP 524
>AF003386-5|AAK82898.1| 529|Caenorhabditis elegans Hypothetical
protein F59E12.4b protein.
Length = 529
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 378 WQCNKCANVNWARRQTCNVCNAP 446
W C C N A RQ C++C P
Sbjct: 504 WNCGHCTFQNEAARQDCSMCGLP 526
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 509 YNSALIITAAVTGTSFNFT---KFWCIAHITRLTPSPIHI 399
Y + + + A T T F + KFW IA + R+ P PI+I
Sbjct: 1821 YKTKIKMPIAKTLTDFRLSDINKFWLIAPLVRMCPKPINI 1860
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 516 RRREHSSDDEYDEFGXKKRKRK----SEQQDKNKTQAHQTEDGAEQXE 647
R+RE DE+ E + K K E+ +K K + + EDG E+ E
Sbjct: 47 RKRERKLQDEFAELKKDEEKDKEEAEKEKNEKEKKEEEKKEDGHEKKE 94
>U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical
protein C13F10.7 protein.
Length = 222
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 516 RRREHSSDD--EYDEFGXKKRKRKSEQQDKNKTQAHQTED 629
RRR SDD + DE +KRK+ E + + + + H + D
Sbjct: 162 RRRRDDSDDSSDSDEEEDRKRKKSKESKKEKRKRRHSSSD 201
>AF003386-2|AAB54255.1| 527|Caenorhabditis elegans Hypothetical
protein F59E12.5a protein.
Length = 527
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 378 WQCNKCANVNWARRQTCNVCNAP 446
W C C N A RQ C++C P
Sbjct: 502 WSCGHCTFQNEAGRQDCSMCGLP 524
>AF003386-1|AAK82899.1| 529|Caenorhabditis elegans Hypothetical
protein F59E12.5b protein.
Length = 529
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 378 WQCNKCANVNWARRQTCNVCNAP 446
W C C N A RQ C++C P
Sbjct: 504 WSCGHCTFQNEAGRQDCSMCGLP 526
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 516 RRREHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTEDGAEQXE 647
R+R HSS D K+ +R+S +D ++T+ E E
Sbjct: 246 RKRSHSSSDRRGRRTSKESRRRSRSRDTHRTRRRSPERSRRSTE 289
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 213 CSDPSCGNINFARRASCYRCNK 278
C++P C ++ F R +C CNK
Sbjct: 286 CNEPLCEDLEFQPRWACQNCNK 307
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 516 RRREHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTEDGAEQXE 647
++++ DD+ DE K+K+K + D K + ED ++ E
Sbjct: 337 KKKKDDKDDDEDEDKDDKKKKKDDVDDDMKKDKKKKEDDDKEDE 380
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 522 REHSSDDEYDEFGXKKRKRKS--EQQDKNKTQAHQTEDGAEQXE 647
+E DDE ++ KK K+K+ +++DK K + + +D ++ E
Sbjct: 248 KEKDDDDEEEKDKKKKDKKKNDDDEEDKKKDKKKKKDDDDDEDE 291
>AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical
protein Y73B3A.13 protein.
Length = 418
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 213 CSDPSCGNINFARRASCYRCNK 278
C++P C ++ F R +C CNK
Sbjct: 265 CNEPLCEDLEFQPRWACQNCNK 286
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 525 EHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTED 629
E DD+Y+E G +KRK S+++ + ++ ED
Sbjct: 96 EDEDDDDYEEEGPRKRKAPSKKKLVYPRENYRRED 130
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 198 DGDWICSDPSCGNINFARRASCYRCNK 278
DG+W C D S IN A+C R NK
Sbjct: 187 DGNWDCEDGSDEFINKTLTANCTRNNK 213
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 198 DGDWICSDPSCGNINFARRASCYRCNK 278
DG+W C D S IN A+C R NK
Sbjct: 187 DGNWDCEDGSDEFINKTLTANCTRNNK 213
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 525 EHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTED 629
E DD+Y+E G +KRK S+++ + ++ ED
Sbjct: 96 EDEDDDDYEEEGPRKRKAPSKKKLVYPRENYRRED 130
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 435 THYTFDAEPNSHWHIYCIANHQ 370
T YTF AEPN W + A +Q
Sbjct: 1870 TEYTFPAEPNQRWVVKLRATNQ 1891
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 435 THYTFDAEPNSHWHIYCIANHQ 370
T YTF AEPN W + A +Q
Sbjct: 1870 TEYTFPAEPNQRWVVKLRATNQ 1891
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 198 DGDWICSDPSCGNINFARRASCYRCNK 278
DG+W C D S IN A+C R NK
Sbjct: 187 DGNWDCEDGSDEFINKTLTANCTRNNK 213
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 435 THYTFDAEPNSHWHIYCIANHQ 370
T YTF AEPN W + A +Q
Sbjct: 1870 TEYTFPAEPNQRWVVKLRATNQ 1891
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 435 THYTFDAEPNSHWHIYCIANHQ 370
T YTF AEPN W + A +Q
Sbjct: 1870 TEYTFPAEPNQRWVVKLRATNQ 1891
>Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical
protein T23G7.3 protein.
Length = 339
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 522 REHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQTEDGAEQXE 647
+E D+E+DE K+ K++ ++ + + Q +GAE E
Sbjct: 280 KEEIIDEEFDEAERKRLKKEKKRLKRLREQQQPENEGAEGGE 321
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +3
Query: 372 DDWQCNKCANVNWARRQTCNVCNAPKFGEVEARTGYGGGYNERGVVXYRRREHSSDDEYD 551
DD + +++ A +TC +C A + + E + ER + R R +
Sbjct: 597 DDSRDTTGEHMSHAFSKTCKICQAKQLADAEEK--LRKQKEERDLEERRERNRELREAMR 654
Query: 552 EFGXKKRKRKSEQQDKNKTQ 611
+ ++RKR+ E + + K +
Sbjct: 655 QDEMERRKREEESRHRRKAE 674
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,567
Number of Sequences: 27780
Number of extensions: 310193
Number of successful extensions: 1288
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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