Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C20
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   144   7e-36
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   110   1e-25
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   105   5e-24
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    32   0.055
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    30   0.29 
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    28   0.90 
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   8.4  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  144 bits (350), Expect = 7e-36
 Identities = 69/92 (75%), Positives = 82/92 (89%)
 Frame = +1

Query: 130 FPLGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAXVLELAGNASKDLKVKRITPRHL 309
           FP+GR+ R LK +T ++ RVGA +AVYSAA+LEYLTA VLELAGNA+KDLKVKRITPRHL
Sbjct: 66  FPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHL 125

Query: 310 QLAIXGXEELDSLIKATIAGGGVIPHIHKSLI 405
           QLAI G EELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 126 QLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  110 bits (265), Expect = 1e-25
 Identities = 58/103 (56%), Positives = 73/103 (70%), Gaps = 1/103 (0%)
 Frame = +1

Query: 127 AFPLGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAXVLELAGNASKDLKVKRITPRH 306
           AFP+GR+HR L+    +  RVGA A VY AA+LEYL A +LELAGNA++D K  RI PRH
Sbjct: 26  AFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRH 84

Query: 307 LQLAIXGXEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 432
           LQLAI   EEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 85  LQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  105 bits (252), Expect = 5e-24
 Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
 Frame = +1

Query: 127 AFPLGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAXVLELAGNASKDLKVKRITPRH 306
           AFP+GR+HR L+    +  RVGA A VY AA+LEYL A +LELAGNA++D K  RI PRH
Sbjct: 26  AFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRH 84

Query: 307 LQLAIXGXEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 420
           LQLAI   EEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 85  LQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 124 SAFPLGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAXVLELAGNASKDLKVKRITPR 303
           S FP+ RI + +       G+V     V  +  LE     +++ +   ++  + KR+T  
Sbjct: 22  SRFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVS 80

Query: 304 HLQLAIXGXEELDSL 348
           HL+ A+   E+ D L
Sbjct: 81  HLKHAVQSVEQFDFL 95


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 216 RYFGISYSXGFGVGGKCV*RFKSEAYYSSALTTCY 320
           +Y G +YS G  V GKCV +F +  +     +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 115 SRTSAFPLGRIHRHLKNRTTSHGRVGAT 198
           S T+ FPLG+ +R   +RTTS   V +T
Sbjct: 162 SETTKFPLGKSYRPKASRTTSSQSVAST 189


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 238 AXVLELAGNASKDLKVKRITPRHLQLAIXGXEELDSLIKATI 363
           A  L++       L+ K ITP+ L       +E+ ++IKA +
Sbjct: 319 ANALDMTDRFLPRLRTKHITPKLLSFTPYTAQEISTIIKARL 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,137
Number of Sequences: 5004
Number of extensions: 35233
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)