Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C17
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   180   2e-46
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   180   2e-46
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   4.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   4.0  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.3  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  180 bits (437), Expect = 2e-46
 Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 5/170 (2%)
 Frame = +2

Query: 125 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITV 304
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIA AT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 305 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL-----AGCNRNCEX 469
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL            + 
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 470 HXKQINGPVPFWLSKRDSWAQHSQLDVLVEGRPPHDLIDDINSGALTIDE 619
             K+++G V   L    S      +   V+G+ PHD+  +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFS------VGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  180 bits (437), Expect = 2e-46
 Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 5/170 (2%)
 Frame = +2

Query: 125 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITV 304
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIA AT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 305 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL-----AGCNRNCEX 469
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL            + 
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 470 HXKQINGPVPFWLSKRDSWAQHSQLDVLVEGRPPHDLIDDINSGALTIDE 619
             K+++G V   L    S      +   V+G+ PHD+  +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFS------VGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 399 VKSRK-ISNTTATSPL-QDVIGIAXIMXNRSMARYLSGSVKEILGHSTV-SWMYWWRAG 566
           + +RK +SN  A   + QD    + ++  RS+      ++K++LG ST+  W+ W R G
Sbjct: 241 LSTRKGLSNQIAKEIVAQDPSSTSELLSFRSLVDS-EKTIKDVLGQSTILEWVRWERGG 298


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 406 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 299
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 204 DDVAPTSPPTHRKFTILI 151
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,721
Number of Sequences: 5004
Number of extensions: 52444
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)